Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0170 ATGGCACAACTGCCTCCAAAAGTCCCCAACATGACTCAGAATTGGCCTTCTTTCCCCCACCAAAGAATGCCATCCATGGCAGCTCCTGCTCTCCTCCCCGCCGCCACCGCCACCACCACCTCCCAACATCCTTCTTGGGTGGACGAGTTTCTCGACTTCTCCTCCTCCAGGCGGGGCTCCCACCGCAGGTCTGTCAGCGACTCCATCGCCTTCCTTGAAGCTCCGGTGCTGGTTGAGGAAGCTAGGCATTCTCATGCCACAATGCTGCATGGCGCCAACGGCTTTGACCGGTTGGATGATGATCAGCTCATGTCTATGTTCTCCGACGACATATCCCTCACCGTGCCGCCCACTGTGTCGTCTTCCGGCCCGTCCACACCATCCGATCAGAACAGTAATAATGATGAGAAAGGCGATGAGAAAGGAGCAGCCCTTGACCAGCAGCCACCAAAGAATGAGCCTGGAGAGGTGGAGAGCTCATGCAAAACTGAATTACCATCTTTCAGGCCTTCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGAATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACAATACATTTCAGAGCTTGAGCGGAGCGTAACATCTTTACAAACGGAAGTTTCAGCATTGTCTCCGAGGGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGCTCATCAAGAGGCATTGAAGAAAGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAAAGCCTAAAAAAGATGGGGAATTCAGCCACCGGAGCTCCACCGCAGTCAACGACACGACCACACCAAACCACCACCACTGATGCAGCCATGGGGTGTACTGACAAGGTGCAGCTTCTAAACTGA 960 0.524 MAQLPPKVPNMTQNWPSFPHQRMPSMAAPALLPAATATTTSQHPSWVDEFLDFSSSRRGSHRRSVSDSIAFLEAPVLVEEARHSHATMLHGANGFDRLDDDQLMSMFSDDISLTVPPTVSSSGPSTPSDQNSNNDEKGDEKGAALDQQPPKNEPGEVESSCKTELPSFRPSTASNGDSIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMGNSATGAPPQSTTRPHQTTTTDAAMGCTDKVQLLN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0170 319 Coils Coil 262 282 - -
Vvi19g0170 319 Pfam bZIP transcription factor 183 228 IPR004827 GO:0003700|GO:0006355
Vvi19g0170 319 SMART brlzneu 179 243 IPR004827 GO:0003700|GO:0006355
Vvi19g0170 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 233 IPR004827 GO:0003700|GO:0006355
Vvi19g0170 319 MobiDBLite consensus disorder prediction 280 310 - -
Vvi19g0170 319 PANTHER BASIC LEUCINE ZIPPER 34 1 301 - -
Vvi19g0170 319 MobiDBLite consensus disorder prediction 112 132 - -
Vvi19g0170 319 FunFam Basic leucine zipper 61 182 255 - -
Vvi19g0170 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Vvi19g0170 319 MobiDBLite consensus disorder prediction 164 178 - -
Vvi19g0170 319 MobiDBLite consensus disorder prediction 280 311 - -
Vvi19g0170 319 MobiDBLite consensus disorder prediction 112 180 - -
Vvi19g0170 319 SUPERFAMILY Leucine zipper domain 183 237 IPR046347 GO:0003700|GO:0006355
Vvi19g0170 319 Gene3D - 182 255 - -
Vvi19g0170 319 CDD bZIP_plant_RF2 184 234 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0170 Vvi-Chr19 1945683 1947385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0170 1 261 bZIP Transcription Factor Family AT3G58120 56.949 1.96e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi19g0170 bZIP_1 1.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0170 - - vvi:100258873 582.022