Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0169 ATGGCAACAGCCAATGGAGGCACCGACTCAATTGAAAAAGCTGATGTCAAGGGAAGTATTGGAGCTATTCTAGACTATAGCTCGCGCATTGGAAAAGAAGAGAAGGTAGCCATGGAGATGGCTATAGAGGAATTCAACTCTCAGTACTCCAACCAGCATATTGACCTGCTGATAAATGACTCTCAAGGGGAACCCATCCAAGCAGCACTTGCAGCACGGGAGCTTGTATACAGGCATCGAGTAAAAGCAATTCTGGGGCCCCAAACATGGGAAGAAGCATCCTTAGTTGCAGAGGTTGGCAGTCAAGCTTATACCCCCATTCTTTCTCTTGCCTATACAACTCCACAGTGGGCAACAGAAAGGTGGCCCTTCCTCATCCAAGCCTCCGCAGACCAGTCTGCACAAATGAAAGCCATTGCTGCAGTTATTGAGTCTCAGGATTGGCATCGGGTGACCGTAGTATACGAGGACATCCCGTCCTCCGCCACTGGAGCCGTTCTCCAACTCTCAGAAGCCCTGAAAGATGTAGGAATAGAAATAGGCCACCTTCTGCCTCTCCCACCTTTGTCTTCTTCTTCTTCATTGGTTGAAGAGCTCCAGAGTCTTAAAGAAGGGCAGTGTAGAGTGTTTGTGGTTCATACATCCTTGCAATTGGGGGTTCACCTATTCGAAACTGCCAAGAAGATGGAGATGATGAAAGAGGGGTATATATGGATCATTACAGACACCATTTCCAGTCTTGTCCATTCCATAAAAGCCTCTACAATCTCCTCATCCATGGATGGAATTGTAGGTGTCAAAAGCTACTTCAATGAAAACACTCCCCAGTTCAAGATATTCCGGGGGAGATTCAGGAGGATGTTCATCTCAGTACACCCTGACGAAGAAAAGAATGAACCCGGGATTTACGCAGCTAAGGCCTATGATGCCACTTGGGCTGCAGCTCTAGCAATGACGGGAGGAAGGGGTACTGGCCAACAACTCCTAGAAAAAATTTCAAACGGCCAATTTGATGGCTTAACTGGAAAGATCCAATTCAGCGATCAGAAATTAGCCCCAGCACATATATTTCAGATTGTCAATGTTGTAGGGAAGAGTGATAGAGAACTAGGGTTCTGGTCCGAGACATCGGAGGAGGAGTCAGGTTTTTGGAGAGATAGAAGAGCTCTGGCACAGGTGGTTTGGCCTGGGGGACCCAGGAATACTCCAAGGGGATGGACTCCTCCAACAGATGAGAAGCCACTGAAGATTGGCGTGCCCAGTGGGTCCACTTTCAAACAGTTTGTAGAAGTGATACAAGATGGAAATAATATTTCTTTCAACGGATTCTCAATCAATGTCTTCAATGCAACTGTGGAACGCTTGCCATATGCTTTGCCACATAAGTTGTATGCCTTCAATGGCACATACGATGAACTAGTGAGACAGGTTTATTTAAAGAAATTTGATGCAGTAGTTGGAGATGTTGCAATAGTAGCCAAAAGGTTTGAGCACGCAGAGTTCACACAACCTTATGCTGAACCAGGATTGCAGATGATAACCCCAGTTCGATCAAAAAGCAGCAATAAAGCATGGCTATTCATGAAGCCCTTCACAAGAGCCATGTGGATTCTAACAACATTCATAAATGTCTACAACGGATTCGTGGTATGGTTGATAGAAAGAAACCACTGCAATGAGCTTAAAGGCTCAGTCCTCAATCAAATAGGAACCCTACTGTGGCTAGCTTTCTCAACACTCTTTTCTCTGCATGGGGAAAAACTTCACAGCAATTTGTCGCGGATGGCGATGGTGGTGTGGCTGTTTGTGGCACTAGTCATCACACAGAGTTACACGGCGAACCTCACCAGCATGCTCACTGTCCAGCAGCTTGAACCGACGGTAGCCGATATCGAGACGCTGAAGAGTAGCAACTCGATGATCGGGTACTGTAGGGGGTCCTTTGTGTCAGCATACTTGAAGGATGTCTTAGGTTTCAATGAAAAAAACATCAAGAATTATTCATCACCTGAAGAGTATGCTAAAGCCCTCAAGGATGGACAGATAGCCGCAGCATTTCTTGAAGCTCCTTTTGCGAAATTATTCCTTGCGAAGTACTGCAAGAGCTTCATGGCAGCTGGGACGAGTTACAAAGTCGGAGGATTTGGATTCGTGAGTGCATTCTCTCTTTTCTTCTTCCATACCGGCATATTAAAAGTCATTGGATTCAGCTGCACAAAATTAATGGATACATTACCTTACCTCTCTTTGTTCATGGCCTTGATTTTGTTATTTTCACGAAAAGGAACAGCCGAGGATCCTGCTAAGGGAATTATAGGTGCCATTGTGGATCACACTTCTCGCATAGGTAAAGAAGAGAAGGTAGCAATGGAGATGGCTATTGATGATTTCAGACTCTACTCTAATGGAAGTCTTCGTCTGCACATTGAAAACTCTCAAAGGGAGCCCATCCAAGCTGCTCTTGCAGCTATGGATCTTATCAATAAGCATCAAGTTCAAACTATTATCGGGCCACGAACATGGGAAGAAGCATCCTTAGTTGCAGAGGTTGGCAGCCAAGCTCATGTCCCTATTCTTTCTTGCGCCAGTGCAACTCCACAGTGGGCATCTGAGAGGTGGCCCTTCCTCATTCAAGCCTCACCCAACCAACAAGCAGAAATCGAAGCAGTGACTGCAATTATTCGGTCTTGGGGATGGCATAGGGTCGCCATAATATATGAGGATATCGACTCAGTAGCATCTGAAGTTATCCCTCATTTCACCTATGCCCTGCAGGATATAGGCGCAGAAATCAGCCGTCTTGTAGCTCTCCCACCTTTTGCTTCTTCATTGTCCAAAGAACTCACGAGCCTAAAAAAGGAGCAGTGTCGAGTATTTGTTGTTCATTCCTCGTTGTCATTCGCAACACACATGTTTCAGCAGGCGAATCAAATGGGGATGATAGAGAAAGGTTATGTGTGGATCACTATGGACACCATTACAAGTCTCGCCCACTCTCTCAATGCATCAACCATCTCTACAATGCAAGGAGTGGTAGGGGTCAAGAGCTACTTCAACGAAACCGAGCCAAAATTTCAGGATTTCTATGTCAGATTCCGGAAAAAGTTCAGCTTGGAACATCCTGAAGAGGAAAACCATGAGCTTGGAATTTTTGCAGTGCAGGCCTATGATGCCATATGGACAGTGGCTCAAGCCTTGGTGGGCAACAACCTGGGGGGCCAACACATACTAGAACAAATTTCACTAACCTCCTTCCATGGATTAACAGGACTGGTTGAATTCACAGGCCGGAGAATAGCTCCATTGCGTAGATTTCAGATTGTCAACATGATTGGAAGGAGTTATAGAGAACTCGGGTTCTGGACATCGGAATCAGGCTTCACAGATACTATGGATGAGAAACTTGATTACAACCCTTCAATGAGAACACTAGGACAGGTGTTTTGGCCTGGGGGACCTTGGTCTATTCCCACTGGCTGGACTTTACCATCAAGCTATAAAACCCTAAAAATCGGTGTGCCCATTGGATCAGTGTTCAAATTTTTTGTGAATCCAATGTATGACTCTGAAAACAACCTCTCTTTCAGTGGACTCACCATCAAGATCTTCGAAGCCGTCCTGGAATACTTGCCATACTATTTGCCCCACCAATTCATTCCCTTCAATGGCTCATATGATGCATTAGTACTCCAGCTTGTCCACCCAGAGGTACTGAGAATATTTGTTAATTAG 3732 0.4544 MATANGGTDSIEKADVKGSIGAILDYSSRIGKEEKVAMEMAIEEFNSQYSNQHIDLLINDSQGEPIQAALAARELVYRHRVKAILGPQTWEEASLVAEVGSQAYTPILSLAYTTPQWATERWPFLIQASADQSAQMKAIAAVIESQDWHRVTVVYEDIPSSATGAVLQLSEALKDVGIEIGHLLPLPPLSSSSSLVEELQSLKEGQCRVFVVHTSLQLGVHLFETAKKMEMMKEGYIWIITDTISSLVHSIKASTISSSMDGIVGVKSYFNENTPQFKIFRGRFRRMFISVHPDEEKNEPGIYAAKAYDATWAAALAMTGGRGTGQQLLEKISNGQFDGLTGKIQFSDQKLAPAHIFQIVNVVGKSDRELGFWSETSEEESGFWRDRRALAQVVWPGGPRNTPRGWTPPTDEKPLKIGVPSGSTFKQFVEVIQDGNNISFNGFSINVFNATVERLPYALPHKLYAFNGTYDELVRQVYLKKFDAVVGDVAIVAKRFEHAEFTQPYAEPGLQMITPVRSKSSNKAWLFMKPFTRAMWILTTFINVYNGFVVWLIERNHCNELKGSVLNQIGTLLWLAFSTLFSLHGEKLHSNLSRMAMVVWLFVALVITQSYTANLTSMLTVQQLEPTVADIETLKSSNSMIGYCRGSFVSAYLKDVLGFNEKNIKNYSSPEEYAKALKDGQIAAAFLEAPFAKLFLAKYCKSFMAAGTSYKVGGFGFVSAFSLFFFHTGILKVIGFSCTKLMDTLPYLSLFMALILLFSRKGTAEDPAKGIIGAIVDHTSRIGKEEKVAMEMAIDDFRLYSNGSLRLHIENSQREPIQAALAAMDLINKHQVQTIIGPRTWEEASLVAEVGSQAHVPILSCASATPQWASERWPFLIQASPNQQAEIEAVTAIIRSWGWHRVAIIYEDIDSVASEVIPHFTYALQDIGAEISRLVALPPFASSLSKELTSLKKEQCRVFVVHSSLSFATHMFQQANQMGMIEKGYVWITMDTITSLAHSLNASTISTMQGVVGVKSYFNETEPKFQDFYVRFRKKFSLEHPEEENHELGIFAVQAYDAIWTVAQALVGNNLGGQHILEQISLTSFHGLTGLVEFTGRRIAPLRRFQIVNMIGRSYRELGFWTSESGFTDTMDEKLDYNPSMRTLGQVFWPGGPWSIPTGWTLPSSYKTLKIGVPIGSVFKFFVNPMYDSENNLSFSGLTIKIFEAVLEYLPYYLPHQFIPFNGSYDALVLQLVHPEVLRIFVN* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0169 1243 SUPERFAMILY Periplasmic binding protein-like I 20 406 IPR028082 -
Vvi19g0169 1243 Gene3D - 1164 1238 - -
Vvi19g0169 1243 Gene3D - 882 1125 - -
Vvi19g0169 1243 CDD PBP1_GABAb_receptor_plant 19 387 IPR044440 -
Vvi19g0169 1243 FunFam Glutamate receptor 135 298 - -
Vvi19g0169 1243 CDD PBP1_GABAb_receptor_plant 772 1131 IPR044440 -
Vvi19g0169 1243 Gene3D - 777 1100 - -
Vvi19g0169 1243 Pfam Bacterial extracellular solute-binding proteins, family 3 437 701 IPR001638 -
Vvi19g0169 1243 FunFam Glutamate receptor 404 523 - -
Vvi19g0169 1243 Gene3D - 524 664 - -
Vvi19g0169 1243 Gene3D - 403 523 - -
Vvi19g0169 1243 FunFam Glutamate receptor 524 662 - -
Vvi19g0169 1243 Pfam Ligand-gated ion channel 534 687 IPR001320 GO:0015276|GO:0016020
Vvi19g0169 1243 CDD GluR_Plant 413 718 - -
Vvi19g0169 1243 Gene3D - 20 354 - -
Vvi19g0169 1243 SUPERFAMILY Periplasmic binding protein-like I 772 1160 IPR028082 -
Vvi19g0169 1243 FunFam Glutamate receptor 886 1046 - -
Vvi19g0169 1243 Pfam Receptor family ligand binding region 35 363 IPR001828 -
Vvi19g0169 1243 Pfam Receptor family ligand binding region 787 1111 IPR001828 -
Vvi19g0169 1243 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 732 IPR015683 -
Vvi19g0169 1243 Gene3D - 131 378 - -
Vvi19g0169 1243 SUPERFAMILY Periplasmic binding protein-like II 389 718 - -
Vvi19g0169 1243 SMART GluR_14 416 767 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0169 Vvi-Chr19 1927896 1943115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0169 20 718 Ion Channels AT2G29120 33.875 2.14e-136 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0169 - - vvi:100262382 1374.38