Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0168 ATGAAAGCTGTGGCAGCCATTATCGGGTCTTGGGGATGGCGTCGGATCAATGTGATATACGAGGATACCAACTCTGCTGGCTCTGAGATCATTCCATTTCTTGCTGATGCCCTCAAGCAAGTTGGTTCAGAAATCGGATACCTTGCAGCTCTCCCACCATCATCTGCAGTTAATTCTTCTTCTTTATCTGATCAGCTCCAACGGCTTAAAGGAAAGCAGTCGCAAGTCTTTGTGGTTCATTCATCTTTATCAATGGCGGAGCGTGTGTTTTCAAAAGCTAATGAATTGGGCATGATGGAAAAGGGTTCTGTTTGGATCACTACAGACAGTATCACAAATCTTGTACATTCCATGAATTCCTCAATCATCTCTTCCATGGAAGGTGTTCTAGGAATGAAGAGCTTCTTCCAGGAAGACGGAGCCCGGTTCCAAGACTTCTACTCCAGATTTCGACAGAAGTTTCGATCACTGTATCCTAAGGAAGACAACCACGAGCCTGGGATTTTCGCCGTTCGGGCATATGATGCTGTGTGGTCTGTTGCTCTAGCAATGGACAACAACGGGTCGACCCAACAATTGTTAGAAAAGATTGAACTCAGCGATTTCCATGGCCTCACAAATAGAATCAAATTTGAGAGACGACGCTTGGCTCCACAGCGCATGTTTCAGATTGTTAATGTGATTGGAAAAAGTTATAGAGAGCTCGGATTCTGGTCGGAGGGATCAGGCTTCGCCAAGCCTACTAATGGTCAAATTCAAAACAGTAGCTCCATGGACATCCTGGGGCAAGTGTTTTGGCCAGGAGGCCTTATTTCCACCCCAAGAGGATGGGTACTTCCTACAAGCGAAACCCCATTGCGAATTGGAGTGCCCCTCAATGCCACATTCAAACAATTTGTTTCTGTAACATATGATGATGGAGGCAATCCATCGGTTTCCGGGTTCTCAATCGAAGTCTTCAAAGCAGTTCTGAAACATTTAAACTACATTCTACCTTATGAGTTTTTTCCCTTCAGTGGTATCTATGATGATTTGGTGGAACAGGTTCATCTCAAGGACATCCCGTCCTCCGCCACTGGAGCCGTTCTCCAACTCTCAGAAGCCCTGAAAAATGTAGGAATAGAAATAGGCCACCTTCTGCCTCTCCCACCTTTGTCTTCTTCTTCTTCATTGGTTGAAGAGCCCCAGAGTCTTAAAGAAGGGCAGTGTAGAGTGTTTGTGGTTCATACATCCTTGCAATTGGGGGTTCACCTATTCGAAACTGCCAAGAAGATGGAAATGATGAAAGAAGTGTATGTATGGATCATTACAGACACCATTTCCAGTCTTGTCCATTCCGTAAAAGCCTCTACCATCTCCTCATCCATGGATGGAATTGTAGGTGTCAAAAGCTACTTCAATGAAACCACACCCCAGTTCAAGATATTCCGGGGGAGATTCAGGAGGAAGTTCATCTCAGAACACCCTGACGAAGAAAAGAATGAACCCGGGATTTACGCAGCTAAGGCCTATGACGCCACTTGGGCTGCAGCTCTAGCAATGAAGGGAGGAAGGGACTTCTACTCCAGATTTCGACAGAAGTTTCGATCACTGTATCCTAAGGAAGACAACTACGAGCCTGGGATTTTCGCCGTTCGGGCATATGATGCTGTGTGGTCTGTTGCTCTAGCAATGGACAACAACGGGTCGACCCAACAATTGTTAGAAAAGATTGAACTCAGCGATTTCCATGGCCTCACAAATAGAATCAAATTTGAGAGACGACGCTTGGCTCCACAGCGCATGTTTCAGATTGTTAATGTGATTGGAAAAAGTTATAGAGAGCTCGGATTCTGGTCGGAGGGATCAGGCTTCGCCAAGCCTACTAATGGTCAAATTCAAAACAGTAGCTCCATGGACATCCTGGGGCAAGTGTTTTGGCCAGGAGGCCCTACTTCCACCCCAAGAGGATGGGCACTTCCTACAAGCGAAACCCCATTGCGAATTGGAGTGCCCCTCAATGCCACATTCAAACAATTTGTTTCTGTAACATATGATGATGGAGGCAATCCATCGGTTTCCGGGTTCTCAATCGAAGTCTTCAAAGCAGTTCTGAAACATTTAAACTACAGTCTACCTCATGAGTTTTTTCCCTTCAGTGGTACCTATGATGATTTGGTGGAACAGGTTCATCTCAAGAAATTTGATGCAGTGGTTGGCGATACGTCGATAGTTTCAAAGAGATGGGAGCTGGCTGAATTTTCGCATCCCTACACAGAACCAGGATTGATGATGATAGTTCCTGAGAAAGTAGAGACATCCAATAGGGCTTGGTTATTCATGAAGCCCTTCACCAAGGCGATGTGGGTTCTAACAGGTGCTATAACCATCTACAATGGCTTCACCCTCTGGTTGATAGAACGAAACCAAAACCCAGAACTTATGACAGGCTCTATTCTGAACCAAATGGGAACCTTGGTTTGCCTATCCTTCACCACCCTCTTCTCTATGCATGGAAGGCAACATAGTAATCTGTCCCGGTTGGTAATGGTGGTCTGGCTGTTCGCATCTCTGGTGATAACGAATAGCTACACTGCTAATCTTACAAGCATGCTTACGGTCCAACGCCTTGAACCTACTGTGGTCGATGTGGAAGATCTGAAGAGTGCTAATTCCATTGTTGGGTGCAGCGGACGATCATTCGTGGTGAGGTATTTGGTGGATGTCATAAGAATAAAAGAAAGTAACATAAAAGATATTACTTCAGCTGAAGAGTATGCTCCAGCTCTCAGAAGCGGAGAGATAGCAGCAGCCTTCATTGAAGCTCCCTACGCCAAACTATTCCTTGCCCAAAACTGCAAAGGCTTTGCAGCTTCTGGGAAAACATACAAAGTTGGTGGCTTTGGATTTGTGTTTCCAAAGGGATCATCTATTCTTCCAGACATATCTAAAGCAGTCTTGGAGGTGTCCGAAAAAGGTGAGTTAGGCGTCTTAGAGAACAATTTGATTGGATCCCAGAAGTGTGATTCAAATGCAGAAATCAGTGAGGATAGCAGTAGTCTTAGCCCTAGCAGCTTTTGGGTACTTTTCTTAATAACAGGAGGTGTATCAACAGTTTGTCTTGTAATCTTCATGGCCAGAGAAAGGTTAACCTATTTGTATAATTATTTGTTGGGGCATATGGCCATTTGGAGACTAATATCAGCTGTAATGAGAAGCTGGAGATCACATCCACGTGGTCGATTCTCTAGAGGAATTAGCGACGTAGAAAGTAATGGTAATGCCCAACACACATCTATCCATTCACCACAATACTTTGGATATAGAGTGCCATGGCAGAGAAATTACAGCTCCAGAAGTTCTTCCTAA 3348 0.4483 MKAVAAIIGSWGWRRINVIYEDTNSAGSEIIPFLADALKQVGSEIGYLAALPPSSAVNSSSLSDQLQRLKGKQSQVFVVHSSLSMAERVFSKANELGMMEKGSVWITTDSITNLVHSMNSSIISSMEGVLGMKSFFQEDGARFQDFYSRFRQKFRSLYPKEDNHEPGIFAVRAYDAVWSVALAMDNNGSTQQLLEKIELSDFHGLTNRIKFERRRLAPQRMFQIVNVIGKSYRELGFWSEGSGFAKPTNGQIQNSSSMDILGQVFWPGGLISTPRGWVLPTSETPLRIGVPLNATFKQFVSVTYDDGGNPSVSGFSIEVFKAVLKHLNYILPYEFFPFSGIYDDLVEQVHLKDIPSSATGAVLQLSEALKNVGIEIGHLLPLPPLSSSSSLVEEPQSLKEGQCRVFVVHTSLQLGVHLFETAKKMEMMKEVYVWIITDTISSLVHSVKASTISSSMDGIVGVKSYFNETTPQFKIFRGRFRRKFISEHPDEEKNEPGIYAAKAYDATWAAALAMKGGRDFYSRFRQKFRSLYPKEDNYEPGIFAVRAYDAVWSVALAMDNNGSTQQLLEKIELSDFHGLTNRIKFERRRLAPQRMFQIVNVIGKSYRELGFWSEGSGFAKPTNGQIQNSSSMDILGQVFWPGGPTSTPRGWALPTSETPLRIGVPLNATFKQFVSVTYDDGGNPSVSGFSIEVFKAVLKHLNYSLPHEFFPFSGTYDDLVEQVHLKKFDAVVGDTSIVSKRWELAEFSHPYTEPGLMMIVPEKVETSNRAWLFMKPFTKAMWVLTGAITIYNGFTLWLIERNQNPELMTGSILNQMGTLVCLSFTTLFSMHGRQHSNLSRLVMVVWLFASLVITNSYTANLTSMLTVQRLEPTVVDVEDLKSANSIVGCSGRSFVVRYLVDVIRIKESNIKDITSAEEYAPALRSGEIAAAFIEAPYAKLFLAQNCKGFAASGKTYKVGGFGFVFPKGSSILPDISKAVLEVSEKGELGVLENNLIGSQKCDSNAEISEDSSSLSPSSFWVLFLITGGVSTVCLVIFMARERLTYLYNYLLGHMAIWRLISAVMRSWRSHPRGRFSRGISDVESNGNAQHTSIHSPQYFGYRVPWQRNYSSRSSS* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0168 1115 SUPERFAMILY Periplasmic binding protein-like I 364 515 IPR028082 -
Vvi19g0168 1115 SUPERFAMILY Periplasmic binding protein-like II 635 993 - -
Vvi19g0168 1115 CDD GluR_Plant 659 996 - -
Vvi19g0168 1115 FunFam Glutamate receptor 649 769 - -
Vvi19g0168 1115 Pfam Bacterial extracellular solute-binding proteins, family 3 676 991 IPR001638 -
Vvi19g0168 1115 FunFam Glutamate receptor 1 164 - -
Vvi19g0168 1115 Gene3D - 514 590 - -
Vvi19g0168 1115 FunFam Glutamate receptor 347 494 - -
Vvi19g0168 1115 SUPERFAMILY Periplasmic binding protein-like I 2 277 IPR028082 -
Vvi19g0168 1115 Gene3D - 770 914 - -
Vvi19g0168 1115 Gene3D - 175 284 - -
Vvi19g0168 1115 FunFam Glutamate receptor 770 908 - -
Vvi19g0168 1115 Gene3D - 285 356 - -
Vvi19g0168 1115 SUPERFAMILY Periplasmic binding protein-like I 520 651 IPR028082 -
Vvi19g0168 1115 Gene3D - 1 165 - -
Vvi19g0168 1115 Gene3D - 357 493 - -
Vvi19g0168 1115 Pfam Ligand-gated ion channel 992 1028 IPR001320 GO:0015276|GO:0016020
Vvi19g0168 1115 SUPERFAMILY Periplasmic binding protein-like II 261 347 - -
Vvi19g0168 1115 Gene3D - 654 769 - -
Vvi19g0168 1115 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 360 515 IPR015683 -
Vvi19g0168 1115 SMART GluR_14 659 998 IPR001320 GO:0015276|GO:0016020
Vvi19g0168 1115 Pfam Receptor family ligand binding region 1 228 IPR001828 -
Vvi19g0168 1115 Pfam Receptor family ligand binding region 363 602 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0168 Vvi-Chr19 1908116 1925741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0168 1 351 Ion Channels AT5G11210 31.105 1.66e-46 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0168 - - vvi:100257269 1227.62