Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0166 ATGGATTCATTTCTCTTCTCCTTCATGGCCACAATTCTGTTGCTTCCAGGAGCAGCATCCGAAGTAGGCACCGGCCATATGGGCAGTATTGGTGTCATCGTCGATAATAGTTCGCTTATCGGTAAAGAAGAGATAGTAGCAATGAAGTTAGCCATCTATTACTTCAACAACAAAACTAATCGACAATTGGATTTGCATGTGAGAGACTCTCAAAGTGATCCAGTTCTTACTTTGCTTTCCGGAGGAAGGCAACATAGTAATCTGTCCCGGTTGGTAATGGTGGTCTGGCTGTTCGCATCTCTGGTGATAACGAATAGCTACACTGCTAATCTTACCAGCATGCTTACGGTCCAACGCCTTGAACCTACTGTGGTCGATGTGGAAGATCTGAAGAGTGCTAATTCCATTGTTGGGTGCAGCAAACGATCATTCGCGGTGAGGTATTTGGTGGATGTCATAGGAATAAAAATGAGAAACATAAAAGATATCACTTCAGCTGACCAGTATGCTCGAGATCTCAGAAGCGGAGAGATAGCAGCAGCCTTCATTGAAGCTCCCTACGCCAAAATATTCCTTGCCCAAAACTGCAAAGGCTTTGCTGCTTCTGGGAAAACATACAAAGTTGGTGTCTTTGGATTTACATCGGAGGAGGAGTCAGGTTTTTGGGGAGATGGAAGAGCTCTGGCACAGGTGATTTGGCCTGGGGGACCCAGGAATACTCCAAGGGGATGGACGACTCCAACAGATGAGAAGCCACTGAAGACCAGTGGGTCCACTTTCAAACAGTTTGCAGAAGTGACACAAGATGGAAATAATATTGCTTTCAAAGGATTCTCAATCAATGTCTTCAATGCAACTAGGGGTCTCCAAAAAGCCCGCGGCCCGCTTTAG 891 0.4568 MDSFLFSFMATILLLPGAASEVGTGHMGSIGVIVDNSSLIGKEEIVAMKLAIYYFNNKTNRQLDLHVRDSQSDPVLTLLSGGRQHSNLSRLVMVVWLFASLVITNSYTANLTSMLTVQRLEPTVVDVEDLKSANSIVGCSKRSFAVRYLVDVIGIKMRNIKDITSADQYARDLRSGEIAAAFIEAPYAKIFLAQNCKGFAASGKTYKVGVFGFTSEEESGFWGDGRALAQVIWPGGPRNTPRGWTTPTDEKPLKTSGSTFKQFAEVTQDGNNIAFKGFSINVFNATRGLQKARGPL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0166 296 FunFam Glutamate receptor 36 158 - -
Vvi19g0166 296 Pfam Ligand-gated ion channel 84 143 IPR001320 GO:0015276|GO:0016020
Vvi19g0166 296 SUPERFAMILY Periplasmic binding protein-like II 103 215 - -
Vvi19g0166 296 MobiDBLite consensus disorder prediction 236 255 - -
Vvi19g0166 296 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 59 217 IPR015683 -
Vvi19g0166 296 Gene3D - 45 160 - -
Vvi19g0166 296 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0166 Vvi-Chr19 1870767 1878499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0166 86 219 Ion Channels AT2G17260 38.806 2.04e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0166 - - vvi:100247013 260.766