Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0162 ATGGGTGCGGGAGGCTGGTTTAAGATGATAATTAGCCTAAGGAAAGTGAAGGAAGATAGATCTAAACCAGCAAAGGTGCACTCAACCACCGAAAAATCAAGCAACTCCAAGGGGAAGCACCATATTGATAAGGAGTCGAGCAGTCTTGCCAATGGCGCTTTGGGTAAAAGTGCCGGTGTTCATAAGATTCCAGTTGAGGAGAGAGCTGCAATTCAAATTCAAACAACATACCGGGCATATAAGGCAAGAAAAAACCTGCACCGTTTGAGAGGGACAGTGAGATTTCAGGTGATGACACAAGGCGATATTGTTAGGAAGCAGGCTTCAACCACATTGAGCTACATACATGCATGGAGCAGAATACAGGCTCAGATTAGTGCCAGGCGGCATTGTATGGCTCAAGAAGGTCGGGTTAGGCAGAAGAAACTTGAGAATCAGTTGAAACTTGAGGCAAAGCTGCATGAGCTAGAGGTGGAATGGTGTGGTGGCTCTGAAACCATGGAGGAAATCCTTTCGAGGATACAGCAGAGGGAAGAAGCAGCAGTTAAGCGTGAGAGAGCCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACAATAGTCAGTATCTGGGCCACACTTATTATGATCTCGGCAAAGAAAACTGGGGTTGGAGCTGGATGGAGCGCTGGATAGCTGCTCGACCATGGGAGACTCGGGTTCATGCTCAGTCAACTCTTCCAAAGAAAGCTCAAACCAAGCATGTGATCAAGGTAGGAAAAATTACAAACCCACAGACAATGAAAACTCCAGTTCTAGTCAGGCCTGCTTTGTCTAATGGGAAGGGAACTACAAAGCCAGCTGCCCAAGAAGCAGTGACCACTGCAGTCAGCTCTTCTCGGTCTGAAGCTGAAGAAGCAAACACCAAACATGAACAAATTATCACTTAG 930 0.4699 MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGALGKSAGVHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWSRIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRIQQREEAAVKRERAMAYAFSHQWRANNSQYLGHTYYDLGKENWGWSWMERWIAARPWETRVHAQSTLPKKAQTKHVIKVGKITNPQTMKTPVLVRPALSNGKGTTKPAAQEAVTTAVSSSRSEAEEANTKHEQIIT* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0162 309 MobiDBLite consensus disorder prediction 18 46 - -
Vvi19g0162 309 MobiDBLite consensus disorder prediction 272 309 - -
Vvi19g0162 309 MobiDBLite consensus disorder prediction 18 51 - -
Vvi19g0162 309 Coils Coil 139 159 - -
Vvi19g0162 309 PANTHER IQ-DOMAIN 5-RELATED 1 285 - -
Vvi19g0162 309 MobiDBLite consensus disorder prediction 276 296 - -
Vvi19g0162 309 Pfam IQ calmodulin-binding motif 67 86 IPR000048 GO:0005515
Vvi19g0162 309 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
Vvi19g0162 309 SMART iq_5 65 87 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0162 Vvi-Chr19 1809245 1810993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0162 1 247 IQD Protein Family AT3G15050 53.036 9.96e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0162 - - vvi:100253850 611.298