Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0161 ATGGGAGAGACTCACCAGCAACAACAGGCAGCGTCGTCGTCGAGAATGGGGATGAGGAGCGTGGTCGGCGGCGAGATTGTGGAGGTTCAAGGCGGCCACATTGTCCGCTCCACCGGCAGAAAAGACCGCCACAGCAAGGTGTGCACCGCCAAAGGCCCCAGAGACCGCCGCGTTCGCCTCTCCGCCCACACTGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAGGCCAAAGCCGCCATCGACGAGCTCGCTCAACTCCCAGCTTGGCATCCCACTGCCATCACCGTCACCGCGGCCGCCGCTGCTGCTACCACCGCAACCACCACCCACCACCAGGAAGACGAAGAAAATCCCAACCAGGTCGCCATTGATGGCGACGATGATCGTGTGCAAATGCATCACGGCAACAATCCGGACCCCAACCCCAATCCTAACCCTAACCAAAACCCTAGTTTTCTTCCGCCATCGTTAGACTCTGATACCATTGCGGACACAATCAAGAGCTTTTTTCCCATGGGTGCTTCTGGGGAATCCTCGTCTTCGTCCGTACAGTTTCAGAGCTACCCGCCCGATTTGCTCTCGAGAACCAGTAGTCAGAATCAAGATCTTCGCCTTTCGCTTCAGAGCTTCCAAGACCCTATGCTTCTTCATCATCACCACACCCAGAGCCACTCTCATCATCAACAACAAGCCCTTTTTTCGCCGTTAGGCTTCGACGCCCCCTCCGCCGCTTGGTCCGAGCACCACGCAGCGGAGATGGGGCGGTTTCAGAGAATGGTGGCTTGGAACGCCGGCGCCGAGAGCAGTGGCGGTGGAGGATTCGTGTTCAACTCCCCGCCGACACCGACACCAGCTCCGCCGCCGCTTCAGCCATTGTTTTGCCAAAGCCAGATGTATTCTCAGAGGGGACCCCTTCAGTCCAGCAACACGCCTTCGATTCGCGCTTGGATAGACCCGCCAATTGCCGCCACCATCGACCACCACCACCACCACCATCAAACAACTCCCATTCAACCATCCATGATTTCCGGCATTGGTTTCGTCCCTGGCGGGTTTTCCGGATTTCGGATTCCAGCACGAATTCAGGGTGAGGAGGAGCACGATGGCATCTCCGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCATTGA 1197 0.5815 MGETHQQQQAASSSRMGMRSVVGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTAITVTAAAAAATTATTTHHQEDEENPNQVAIDGDDDRVQMHHGNNPDPNPNPNPNQNPSFLPPSLDSDTIADTIKSFFPMGASGESSSSSVQFQSYPPDLLSRTSSQNQDLRLSLQSFQDPMLLHHHHTQSHSHHQQQALFSPLGFDAPSAAWSEHHAAEMGRFQRMVAWNAGAESSGGGGFVFNSPPTPTPAPPPLQPLFCQSQMYSQRGPLQSSNTPSIRAWIDPPIAATIDHHHHHHQTTPIQPSMISGIGFVPGGFSGFRIPARIQGEEEHDGISDKPSSASSDSRH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0161 398 MobiDBLite consensus disorder prediction 124 149 - -
Vvi19g0161 398 Pfam TCP family transcription factor 39 143 IPR017887 -
Vvi19g0161 398 MobiDBLite consensus disorder prediction 377 398 - -
Vvi19g0161 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 322 IPR005333 GO:0003700
Vvi19g0161 398 MobiDBLite consensus disorder prediction 120 173 - -
Vvi19g0161 398 ProSiteProfiles TCP domain profile. 40 98 IPR017887 -
Vvi19g0161 398 MobiDBLite consensus disorder prediction 188 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0161 Vvi-Chr19 1805797 1806993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0161 24 398 TCP Transcription Factor Family AT3G15030 55.825 6.45e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi19g0161 TCP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0161 - - vvi:100248756 669.077