Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0156 ATGAGTTGGGGAGTGTGTTCGCTCCGGAGTCTTTACGCGCCGGAGATGCCTCTTCTCCGATCACCTCCGTTCTTCTTTGTTCGAAGCCGCCGACTGTTCGGTACCACGTGCTCCGTTTCGGGCACTAAGAAGAAGAACAAGGAGAAGGTGATAGTGATATCCGGTCCCACCGGCGCCGGAAAGAGTAGGCTTGCATTGGAGCTGGCGAAGCGCCTCAATGGAGAAATTATCAGTGCGGACTCGGTTCAGGTATATCGGGGTCTTGATGTGGGATCTGCAAAGCCTTCACTGATGGATCGTAAGGAAGTGCCACATCATTTGGTTGATATACTGCATCCATCCGAAGATTATTCTGTTGGACAATTTTTTGAGGATGCACGAGAAAAGACAAGAGACATTCTTAACAGTGAACGTGTCCCAATAGTAGCTGGAGGGACTGGATTGTACTTGCGGTGGTTCATATATGGAAAACCAGATGTTCCAAAAGCTTCTCGAGAAATCGCATCTGAAGTATATTCGGAGCTCATGGATTTACAGAGAAACGGGGACTGGGATGCAGCTGTGCAATTGGTGGTCAAAGCAGGTGACTCGAAGGCCCAATCTTTGGCTGCCAACGATTGGTATCGTTTACGTCGCAGCCTTGAGATTATTAAGTCTAGTGGGTCACCTCCATCTGCCTTTCATGTGCCATATGATTCTTTCAGGGAACAGCCCTCAAGTGTAGATCACTCTCATGATGTCAACTCCTCTTCTGATGGATCCAAGGAAAATAAATCAAAGGAGTTGGACTTTGAGTTCATTTGTTTTTTCCTTTCCAGCCAAAGACTTGAACTCTATAGATCGATTGATCTCCGGTGTGAAGATATGCTTTTAGGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAGGCTATGGAGTACCTTGTAACGTGCAGAGAGCAAGGGGGTAGGAGTTCACCCCAAGAATTTTATGCTTTTTTATCTGAATTTCAAAAAGCATCTAGAAACTTTGCAAAAAGGCAAATGACATGGTTCCGTAATGAGCTTATTTATCACTGGCTTGATGCTTCTAGACCCCTGGAAATGGTGCTTAATTTCATACACGATGCATACTACGACCAAACTGGAAAATTGGTCGTGCCTAAATCTCTTAGCATGAAGAAAGATATGTCAAACAACCGTGAAATTAAAGAACTTAAAGCTTACCGCACTAAAAATAGGCATTTCATCAACCGTGAAGATTGCTCTGATATTCTAGACTGGATATGGAGAACACAACAGTGA 1344 0.4457 MSWGVCSLRSLYAPEMPLLRSPPFFFVRSRRLFGTTCSVSGTKKKNKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLMDRKEVPHHLVDILHPSEDYSVGQFFEDAREKTRDILNSERVPIVAGGTGLYLRWFIYGKPDVPKASREIASEVYSELMDLQRNGDWDAAVQLVVKAGDSKAQSLAANDWYRLRRSLEIIKSSGSPPSAFHVPYDSFREQPSSVDHSHDVNSSSDGSKENKSKELDFEFICFFLSSQRLELYRSIDLRCEDMLLGSDGILSEARWLLDNGLLPNSNSATRAIGYRQAMEYLVTCREQGGRSSPQEFYAFLSEFQKASRNFAKRQMTWFRNELIYHWLDASRPLEMVLNFIHDAYYDQTGKLVVPKSLSMKKDMSNNREIKELKAYRTKNRHFINREDCSDILDWIWRTQQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0156 447 Gene3D - 47 438 IPR027417 -
Vvi19g0156 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 358 IPR027417 -
Vvi19g0156 447 Hamap tRNA dimethylallyltransferase [miaA]. 50 385 IPR018022 GO:0008033
Vvi19g0156 447 FunFam tRNA dimethylallyltransferase 9 158 229 - -
Vvi19g0156 447 MobiDBLite consensus disorder prediction 236 257 - -
Vvi19g0156 447 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 50 227 IPR018022 GO:0008033
Vvi19g0156 447 MobiDBLite consensus disorder prediction 238 257 - -
Vvi19g0156 447 Gene3D - 158 229 - -
Vvi19g0156 447 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 47 377 IPR039657 -
Vvi19g0156 447 Pfam IPP transferase 83 368 - -
Vvi19g0156 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0156 Vvi-Chr19 1707582 1726033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0156 53 228 C2H2 Transcription Factor Family AT2G27760 27.717 1.37e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0156 K00791 - vvi:100245121 881.322