Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0155 ATGATGGCTGACCAGGCTATGGTTCGGAAGCTCTCTGCCTGTGAGACCATGGGCTCTGCCACCACCATTTGTACTGACAAAACAGGCATTCTTACTCTGAACCAGATGGAGGTGACAAAGTTTTGGCTTGGCCAAGATCCTGTTGGAGTTTCCTCTTCAATTTCTACAAATCTTCTCAACCTCATCCACCAAGGAGTTGCTCTGAACACATTTGGTAGCGTTTACAGGGCTACTTCAGGATCTAAGTTCGAGTTCTCTGATAGCCCAATAGAAAAAGCAATTCTTTCATGGGCTGTACGGAAACTTGATATGGACATGGAGACAACGAAGCTGAGTTGTACCATTCTCCATGTTGAACCCTTTAATTCGGAGAAGAAAAGAAGTGGGGTTTCAATGAGGAGCAACGCTGATAACACAATCCACGTGCACTGGAAAGGAGCTGCGGAGATGATACTTGCAATCTGTTCGAGTTACTATGACGCTTCTGGAAGCATGAAAGATCTGGATGATGGTGAACGGATGAAATTTGAGCAAATAATTGAAGGCATGGCCGCTAGAAGCCTCCGCTGCATTGCTTTTGCACATAAACAAATTCCAGAGGAAGACCATGGAATTGGGGCAGGCCTGCAAAAGCTGAAAGAAGACAACCTGACCCTTATAGGACTGGTGGGGATAGAGGACCCATGTAGACCAGGAGTGAGAGAGGCTGTGGAAACTTGCAGATGCGCTGGAGTGGACGTCAAAATGATAACCGGTGATAATATATTCATTGCAAGAGCCATAGCCACTGATTGTGGAATACTAAGACCTGATCAAGGCACGACCAGTGAAGTAGTGGTCGAAGGTGAGGTATTTCGGAAGTACACCCCAGAGGAGAGAATGGAGAAAGTTGGTAAAATTCGTGTGATGGCTAGATCCTCTCCCTTTGATAAACATCTTATGGTACAGTGCTTGAAACAGAAAGGTCATGTGGTTGCAGTGACAGGCGACGGCACATACGATGCACCAGCATTAATGGAAGCCAACATAGGACTTTGTATGGGCATACAGGGCACTCAAGTTGCAAAGGAGAGCTCAGATATCATCATATTGGATGATAATTTTGATTCTATTGCCAGGGTTTTCATGTGGGGAAGGTTTGTTCATTACAATGTCCAGAAATTCATCCAGCTCCAACTCACGGTGACTCTTGCAGCCCTTGTAATCAATGTTGTGGCAGTAGTTTCAGCCCATGAAGTTCTCTTTGATGTGCTGAGCTTATTGTGGCTGACTTTGATCCTGGACACGTTATGTGCTCTAGCTCTTGCTACACAGCAGCCCACCAAGGATCTCAATGAGGGGCCACCTGTGAGCCAGACTCAGCCACTTATTACCAACATAATGTGGAGGAATATATTAGCTCAAGCAGTATATCAGATAGCTGTCGGCCTGACCCTAAAGTTCATAGGAGAATCAATCTTCCATGTTAACGAGAAGGTAAAGAACACCTTGATACTCAATATCTCTGCGCTATGCCAGGTTTTCAATCTGGTCAATGCAAAGAAGCTGGAGAAAAAGAACAAGTTGTTTTGGGGGATCACTGGGATAGCCATTGTCCTTGAGGTCGTTGCGGTAGAGTTTTTGAAGAAATTTGGGGATACGAAGAGGTTGAGCTGGGGACAATGGGCTGCATGTATCGGGGTCGCAGCCGTATCTTGGCCGATCGGATTCCTCGTCGAGTACATTCCTGTTTGA 1734 0.4585 MMADQAMVRKLSACETMGSATTICTDKTGILTLNQMEVTKFWLGQDPVGVSSSISTNLLNLIHQGVALNTFGSVYRATSGSKFEFSDSPIEKAILSWAVRKLDMDMETTKLSCTILHVEPFNSEKKRSGVSMRSNADNTIHVHWKGAAEMILAICSSYYDASGSMKDLDDGERMKFEQIIEGMAARSLRCIAFAHKQIPEEDHGIGAGLQKLKEDNLTLIGLVGIEDPCRPGVREAVETCRCAGVDVKMITGDNIFIARAIATDCGILRPDQGTTSEVVVEGEVFRKYTPEERMEKVGKIRVMARSSPFDKHLMVQCLKQKGHVVAVTGDGTYDAPALMEANIGLCMGIQGTQVAKESSDIIILDDNFDSIARVFMWGRFVHYNVQKFIQLQLTVTLAALVINVVAVVSAHEVLFDVLSLLWLTLILDTLCALALATQQPTKDLNEGPPVSQTQPLITNIMWRNILAQAVYQIAVGLTLKFIGESIFHVNEKVKNTLILNISALCQVFNLVNAKKLEKKNKLFWGITGIAIVLEVVAVEFLKKFGDTKRLSWGQWAACIGVAAVSWPIGFLVEYIPV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0155 577 Gene3D - 1 564 - -
Vvi19g0155 577 FunFam Calcium-transporting ATPase 345 577 - -
Vvi19g0155 577 FunFam Plasma membrane calcium-transporting ATPase 2 225 373 - -
Vvi19g0155 577 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 576 IPR023298 -
Vvi19g0155 577 PRINTS H+-transporting ATPase (proton pump) signature 176 194 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi19g0155 577 PRINTS H+-transporting ATPase (proton pump) signature 328 344 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi19g0155 577 PRINTS H+-transporting ATPase (proton pump) signature 360 385 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi19g0155 577 SUPERFAMILY HAD-like 22 426 IPR036412 -
Vvi19g0155 577 Gene3D - 21 373 IPR023214 -
Vvi19g0155 577 PRINTS P-type cation-transporting ATPase superfamily signature 243 253 - -
Vvi19g0155 577 PRINTS P-type cation-transporting ATPase superfamily signature 221 232 - -
Vvi19g0155 577 PRINTS P-type cation-transporting ATPase superfamily signature 328 347 - -
Vvi19g0155 577 PRINTS P-type cation-transporting ATPase superfamily signature 24 38 - -
Vvi19g0155 577 PRINTS P-type cation-transporting ATPase superfamily signature 352 364 - -
Vvi19g0155 577 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 31 233 IPR023299 GO:0000166
Vvi19g0155 577 FunFam Calcium-transporting ATPase 34 228 - -
Vvi19g0155 577 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 577 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi19g0155 577 Pfam haloacid dehalogenase-like hydrolase 21 342 - -
Vvi19g0155 577 Gene3D - 34 228 IPR023299 GO:0000166
Vvi19g0155 577 Pfam Cation transporting ATPase, C-terminus 414 574 IPR006068 -
Vvi19g0155 577 PANTHER CATION TRANSPORTING ATPASE 1 576 - -
Vvi19g0155 577 NCBIfam HAD-IC family P-type ATPase 299 419 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0155 Vvi-Chr19 1702005 1703738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0155 1 577 Primary Pumps ATPases AT3G22910 62.351 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0155 K01537 - vvi:100262268 1088.94