LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0150	ATGGACGCCACCAAGAAGAGGAAGATGGACGAAAACGGCCTCGTATCCACCGACGGCGACTCCCTCACCAAGCTTGCTCCCGAAGACGCCCGCAAAATAATCGAGCCCTTCGGTCACGATCAACTTCTCGAGATCCTCCAGAACGCCGCCGTCCGCCACCTCGACGTCCTCGACGCCATCCGATCTATCGCCGACCGCGACCTCACCCAGCGCAAGTTGTTCATCCGCGGCCTCGGCTGGGACACCACCACTGAAGGGCTTCGCCAGCTCTTTTCTGCCTACGGCGAGCTCGAAGAGGCCGTGGTGATTCTCGATAAGGTCACGGCAAAGAGTAAGGGTTACGGGTTTGTGACGTTCAAGCACGTGGATGGGGCTTTGCTGGCTTTGAAGGAGCCCAGCAAGAAAATTGATGGGAGGATGACGGTTACGCAGCTTGCGGCTTCCGGGTTGTCGGGTCCGGCCTCGAACGCGTCGGCGGTGGATGTGTCCATGCGGAAGATTTATGTGGCGAACGTGCCGGTGGATATGCCAGCGGATAGGCTGTTGGCGCACTTTTCGTCCTATGGGGAAATTGAGGAGGGGCCGTTAGGGTTTGATAAGCAGACAGGGAAGTCGAGGGGCTTCGCTCTTTTTGTGTACAAGACTGCTGAGGCGGCGCAGGCCGCTTTAGTCGATCCAACGAAGATGATCGATGGGAGGCAACTGGTTTGCAAATTGGCGATAGAGGGGAAGAAGGGGAAGACCGGAGGTCCTGCTCAGGCGCCAACTGGGGTTCCTGGAGAAGCGGGACACGGTGACGGGCTTGGAGTGCCACCGCAGGGGTCTATGCCCGGTTCTCTTGGTTCGCAGTATCCTGGTGGGCCAGGTGGGATTTCTGCGTATGGTGGGTTTTCCGGTGGCCCTCCACCGTTGGGTCATCACCATCCTTTGAACTCATCCTTGCCATCATCGCTCGGTGGTGGGCCGGGGTTGTCAAGTCAGGTTCCATCATCTTTGGGTGGCAGTGCTGGGTATGGTGCTGGGTTGGGTGGTCCTTATGGTTCTGCCCACTATGGAGGGCCCAATTCAGCAGGCTATAGCGGGTTGGGCGGAGCTGGAGGATTGGGAGGTGCTGCTGGGGCATTAGGAGTGGCTGGTGGTGCACTGGGCGTTGCTGGAGGTGGGTCTTCATTGTATAGGTTGCCACCGAGTACTGTTGGAATGCCTTCAGGTGGGTATCCTGATAGTGGGCACTATAGCCTGTCATCTTCCTCGGCCTATCCTAGCCAGATCCATCAGCCAGCAGGGACGTCTCCGGTGCCTAGGGTTCCACCAGGGGGAATGTACCCAAGCGGCCCCCCTTACTATTGA	1350	0.5852	MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAIRSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFKHVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLAIEGKKGKTGGPAQAPTGVPGEAGHGDGLGVPPQGSMPGSLGSQYPGGPGGISAYGGFSGGPPPLGHHHPLNSSLPSSLGGGPGLSSQVPSSLGGSAGYGAGLGGPYGSAHYGGPNSAGYSGLGGAGGLGGAAGALGVAGGALGVAGGGSSLYRLPPSTVGMPSGGYPDSGHYSLSSSSAYPSQIHQPAGTSPVPRVPPGGMYPSGPPYY*	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0150	449	Gene3D	-	151	275	IPR012677	-
	Vvi19g0150	449	FunFam	UBP1-associated protein 2C isoform A	54	157	-	-
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	409	429	-	-
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	431	449	-	-
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	402	449	-	-
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	310	330	-	-
	Vvi19g0150	449	Gene3D	-	62	149	IPR012677	-
	Vvi19g0150	449	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	71	148	IPR000504	GO:0003723
	Vvi19g0150	449	SUPERFAMILY	RNA-binding domain, RBD	154	266	IPR035979	GO:0003676
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vvi19g0150	449	FunFam	UBP1-associated protein 2C	158	275	-	-
	Vvi19g0150	449	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	165	242	IPR000504	GO:0003723
	Vvi19g0150	449	SMART	rrm1_1	166	238	IPR000504	GO:0003723
	Vvi19g0150	449	SMART	rrm1_1	72	144	IPR000504	GO:0003723
	Vvi19g0150	449	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	167	235	IPR000504	GO:0003723
	Vvi19g0150	449	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	73	139	IPR000504	GO:0003723
	Vvi19g0150	449	MobiDBLite	consensus disorder prediction	244	330	-	-
	Vvi19g0150	449	PANTHER	GEO13361P1-RELATED	155	367	-	-
	Vvi19g0150	449	SUPERFAMILY	RNA-binding domain, RBD	66	149	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0150	Vvi-Chr19	1660378	1661727	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0150	161	253	C2H2 Transcription Factor Family	AT2G19380	38.947	1.61e-12	67.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0150	K12741		-	vvi:100248626	680.248