Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0146 ATGGAACTGCCAGTGAAGTCACCAGCTTCGCGTGCCCGGAAAGGGTCTTACAGGATAGAAACCAGGAGTTTGTCCTACAAGCTGGGCAGTAGGTATGATGAGGTGAAAAGGGTCTGTTGTGGTTGGGGTTCTGAGGAGGTTCCTGAGTTGATACTGAAGGGTGTGAGTTGTGAAGCTAGGCCTGGTGAGATCACTGCCATTGCTGGTCCTAGTGGGGCTGGGAAGACCACATTGCTTGAAGTTCTTGCTGGGAGGACATGTGGTAGAGTCTGTGGACAGGTGCTTGTGAATGATCAGGCCATGGATGCTGGACTTTTTCGTCGAAAATCGGGGTATGTGACTCAAGATGATGCATTGTTTCCATTGCTGACTGTTGAAGAAACTCTCATGTATAGTGCTCTTTTGAGGCTTCAGGGTGGGAGAAGAGAGGCTGGCAGTAGGGTGAAGGAGCTGATGAGGGAGCTTGGATTGGAACATGTTGCAGGTTCCAGGATTGGTGGGGGAGGATCAAATGGAGGCATTTCAGGTGGGGAGAGAAGAAGAGTTTCCATTGGAGCCGAATTAGTCCATGATCCTGCTGTTATTTTCATCGACGAACCGACTTCAGGGTTGGATTCAGCATCAGCTCTGCATCTGATCTTGCTGCTGAAAGCTACGATGGTTGGTCAAGGAAAGACTGTTGTTTTAACCATTCATCAGCCTGGTTTCCGAATCCTCGAGCTCGTTGACCGTCTCGTTTTGCTCTCAAATGGACTGGTTCTTCACAATGGATCATTGAATCTTCTTGAAGAGAGGCTAAAGTTTGCTGGTCATTGCATTCCTAGGCATGTCAATGTGCTTGAATTCGCCATTGATATTGCAGAAAACTTGGCTGTACAACCTTCAGAAGCTCCCAACAACCACTTGGCTCTAGATGAAAAGGGTTCTAAAGAAAAAAAAGATGCATGCGCCAGCTTATACAGAGAAGAAAAGCCTCCCTTCTACTCGAATTCTCGGTTTGAGGAGGTTTTGATCCTAGGACAAAGATTTTGCAGCATCATATTTAGAACCAAGCAGCTCTTTGCTGCTAGAATCATACAAGCCTTAGTAGCTGGACTGGTACTTGGGACTGTGTTCATTAACACCAACAATGATCAAGGGAAAATGGCCTTACAAGCGCGAATTGGTTTCTTCGCCTTCACTCTCACTTTCTTGCTATCTTCCACAACAGAAGGCCTCCCGATTTTCCTGCAAGAGAGAAGAATTTTGATGAGGGAGACCTCAAGAGGAGCTTATAGAGTATCCTCTTATGTTCTATCAAACACCCTCATCTTTCTTCCTTTCCTTTTGATGGTTTCCCTTCTATACGCCACTCCTGTCTACTGGCTTGTAGGTTTGAGGAGGGATATGGATGGATTCCTCTACTTCTCCCTTGTGGTTTGGCTTGTTGTCTTAATGTCGAATTCATTCGTCGCGTGTTTCAGTGCTCTTGTCCCAAACTTCATCATGGGGACCTCTGTGATTTCAGGGCTCATGGGGTCTTTCTTCCTCTTTTCTGGGTACTTCATAGCCGAGAAAAACATACCCAGTTACTGGATTTTCATGCACTACTTGAGCTTGTTCAAGTACCCATTTGAGTGCTTCATGATAAACGAGTACGGAGGAGAGGAAGGGAAGAAGAGATGTGTGGAAAAAGAGGGAGACCAATGTGGTTTGTTTGGGGATGGTTTCCTAAGACAGCAAGGCCTCGAAGAGCCACAGAAATGGAGCAATTTGGCTGTGATGCTAGGGTTCATCTTGGGATACAGGCTGCTCTGTTTTTTTATTCTGTTGTGTAGATGCTGCAGAAGTACTAGAAACTAG 1842 0.4615 MELPVKSPASRARKGSYRIETRSLSYKLGSRYDEVKRVCCGWGSEEVPELILKGVSCEARPGEITAIAGPSGAGKTTLLEVLAGRTCGRVCGQVLVNDQAMDAGLFRRKSGYVTQDDALFPLLTVEETLMYSALLRLQGGRREAGSRVKELMRELGLEHVAGSRIGGGGSNGGISGGERRRVSIGAELVHDPAVIFIDEPTSGLDSASALHLILLLKATMVGQGKTVVLTIHQPGFRILELVDRLVLLSNGLVLHNGSLNLLEERLKFAGHCIPRHVNVLEFAIDIAENLAVQPSEAPNNHLALDEKGSKEKKDACASLYREEKPPFYSNSRFEEVLILGQRFCSIIFRTKQLFAARIIQALVAGLVLGTVFINTNNDQGKMALQARIGFFAFTLTFLLSSTTEGLPIFLQERRILMRETSRGAYRVSSYVLSNTLIFLPFLLMVSLLYATPVYWLVGLRRDMDGFLYFSLVVWLVVLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAEKNIPSYWIFMHYLSLFKYPFECFMINEYGGEEGKKRCVEKEGDQCGLFGDGFLRQQGLEEPQKWSNLAVMLGFILGYRLLCFFILLCRCCRSTRN* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0146 613 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 16 597 - -
Vvi19g0146 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 267 IPR027417 -
Vvi19g0146 613 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 275 IPR003439 GO:0005524
Vvi19g0146 613 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Vvi19g0146 613 SMART AAA_5 61 252 IPR003593 GO:0016887
Vvi19g0146 613 FunFam ABC transporter G family member 10 36 281 - -
Vvi19g0146 613 Pfam ABC-2 type transporter 336 546 IPR013525 GO:0016020|GO:0140359
Vvi19g0146 613 Gene3D - 31 277 IPR027417 -
Vvi19g0146 613 Pfam ABC transporter 52 202 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0146 Vvi-Chr19 1636824 1638665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0146 34 300 Calmodulin-binding Proteins AT2G36910 25.806 1.37e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0146 K05681 - vvi:100243490 1194.1