Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0145 ATGACTTGTTTCTCTTTCTGTTTTAGAAAGAAGGTAGCTTCTTCAATTACACGAACAGCAGAAGTTGATGACGTGGTTTCAGGAATCCAGAATGTCAATAGGTACAGTTACAGAGAATTGCGAATTGCCACACAGGATTTTAGTCTGGCTAATAAAATTGGGGAGGGAGGTTTTGGTTCCGTCTACAAGGGAACACTCAGAGATGGCACCGTTGTGGCCATAAAGGTGCTTTCAGCTCAGTCACGGCAAGGATTACGAGAATTTTTGACAGAGTTAAGTGTGATCTCAGTAATTGAGCATGAAAACCTTGTAGAGTTGTATGGTTGTTGTGTTGACGAGGATCAAAGAATCTTGGTCTATGGCTATCTTGAGAATAATAGCCTTGCACAAACTCTTTTGGATGGAGGACACAGTGGCATCCAATTTAGTTGGAAAACCCGAACAAAAATTTGCATTGGTGTTGCAAGGGGGCTTGCATTTCTTCATGAGGAGGTCCATCCGCATATTGTTCATAGAGATATCAAAGCAAGCAATATCCTCCTTGACAAAGACCTGACTCCCAAAATCTCTGATTTTGGTCTAGCAAAGCTCATTCCAGAAGACCAGACTCATGTTAGTACACGTGTTGCTGGAACAACAGGTTATTTGGCCCCTGAGTATGCAATAAGAGGTCAGCTGACGAGGAAAGCAGATATTTACAGTTTTGGTGTTCTCCTCTTGGAAATTGTTTGTGGGAGAAGCAACAAGAATACACGGTTAGCTTATGGGGAACATTTTCTTCTTGAAATGGTATGGGAGCTTCATGAGAGAAGGGAGCTAGCAGATGCAGTGGACACATCATTGAATGGGGATTTCGACATTGAGGAGGTTTGCAGATTCCTCAAGATTGGTCTGCTCTGCACCCAAGACATGCCAAAATCCCGGCCAACCATGTCTACTGTGGTCAGCATGCTAACAGGAGAGGCAGATGTGGATGACAATATATCCAGACCTGGCCTCATTTCTGAGCTCATGGGCATTAAAGTTGGAGGTGCCCAGAGATACAAGTCTGATACAGCATCTGGCTCAGGCAAGCTGGACAATTCATCATTGTCATCAGGAATGCCCACTTCAATTGCCACAATGACCTTCAATTCAATATATGATCGAAGCGGGTAA 1158 0.4361 MTCFSFCFRKKVASSITRTAEVDDVVSGIQNVNRYSYRELRIATQDFSLANKIGEGGFGSVYKGTLRDGTVVAIKVLSAQSRQGLREFLTELSVISVIEHENLVELYGCCVDEDQRILVYGYLENNSLAQTLLDGGHSGIQFSWKTRTKICIGVARGLAFLHEEVHPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPEDQTHVSTRVAGTTGYLAPEYAIRGQLTRKADIYSFGVLLLEIVCGRSNKNTRLAYGEHFLLEMVWELHERRELADAVDTSLNGDFDIEEVCRFLKIGLLCTQDMPKSRPTMSTVVSMLTGEADVDDNISRPGLISELMGIKVGGAQRYKSDTASGSGKLDNSSLSSGMPTSIATMTFNSIYDRSG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0145 385 FunFam cold-responsive protein kinase 1 123 333 - -
Vvi19g0145 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vvi19g0145 385 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Vvi19g0145 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 344 - -
Vvi19g0145 385 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vvi19g0145 385 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0145 385 FunFam cold-responsive protein kinase 1 18 122 - -
Vvi19g0145 385 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Vvi19g0145 385 Pfam Protein tyrosine and serine/threonine kinase 49 318 IPR001245 GO:0004672|GO:0006468
Vvi19g0145 385 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Vvi19g0145 385 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0145 385 CDD STKc_IRAK 53 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0145 Vvi-Chr19 1631473 1636289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0145 35 336 Receptor kinase-like Gene Family AT1G56120 54.967 5.00e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0145 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0145 - - vvi:100260593 763.066