Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0142 ATGTTATTGAGCAAAGAAATTGAGGATTTGCATGATGATGATTTTGAAGGGTCAAATGATGAGTGCCGTATTTTTAGAGAGGTTTTCTTTAGAAATAACACCGATAGTGCAAGTAAGAGGTTTCTCGTCACTGGATTTATTAACTTTGAATGTGAGGATAATAAGCAGACAGATACATCGCTCTGTTCAAATAGCGAAAACTCAGCAGTAACAAGTCAGTCATCTAAAGATTTGTACATGGGCGATTCTTGTAATGTACCTGAAGATTCTAGAGGAACTTCTGGTCCGGTGTCTTTTTCTGAGAGATTTACTTTGGTGGAAGGGAATGACCATGATGTAAATGTTAAGCGAATGAAGTTGTCAGATGATGAACTTTGTAACTTGAAACCTGATTTTGAGAAGTTTTTTGATTCATCAGCACCCTTGAAAGAAATTGTTTCTGGTATGTCCCCTCCTGCTTCTGAATCTGTTTATAAAAAGGTAAGATGCCATTTAGTTGAATCTTCGGATCAGGGTGTTAAATACCGTTGCTATCTGCTTAAGCGTCATCTGCAAATGGAGAGAGCATGTAGTTTCAGTGACCGGGATGCTATGAAGTGTAGATTATCCAGCTTAGATGGAAGTGATCGGAAGGAAGTTGTTGTAAGTAAAGCTATTGCTTCTCCTGTTTCTCAGGAGAGCTTTGCAACCAAGCTTTTGGTTGCAAGTCCACCCGTCGCTGTTGCTGATAAGTCTGGGCCTCCACTCTTTTCCGAGGACAGACCAAAGAAATCCGTCTTTCTAGAATTGGATGCGCTTTATGCATCTCCAAGTGTAGAATCTCTGAAGGATCCTCGTCCTCTTCTTCATGATCATATCAATCATGTGCTTATTGCAGCGGGTTGGTCTATTGAGAAGCGTAAAAGGAACAGTAGGCCTCATGAAGAGTCAGTTTATAGATCGCCAGAGGGGAGGCCGATTCGTGAATTTCCTAAGGCTTGGAGATTATGTGGTGAGAATTTATTTGCTGATAGATACAGTTTGGTACAGGAAAATGATGCTAAGGAATGGACTGATATCAGTCAATTCTGGTCTAATCTATCTAACGTATTGACATATATAGATAAAAAGATTAATGAAGCAGAAACTGCTATTACATTGGCTCATCGATGGAGTTTGTTAGATCCCTTCATAACTGTTGTGTTTATTGACAAGAAGATTGGTGCACTGAGAAAGGGAAACGCAGTTACAGCGAAAAGAAGTATAGTGGTTGAAAAGAAACAGAAAAATAATGCTGTTTTGGTCATGAAAGATGTGGGTTGCATAAAAAATCAGTTTGCACGGAGAGATCTTCCAGCTGCGATTTCTGATTCTTCTTTGGCCAGTGGAAGTGCATTGACTGTTTTTGAAGGGACTTATCATATGGCTGATGAAAAAGGTGAGCAATTTGGTGATGGAAGGCCCTTGAAATTTGGTCAACATGCACAGAAGGGGGCAGTGAGGACTCTGAAGGGGGTTTCAATATATATGGCTGATGAAAAGGGTACGTGTTCAATAGATACTGTGGATGCAATGGCAAATCAGGGTGGGGGAATGCTAGAGAAAAAAAGAAGCAGTTTGGATCCGAGTTCTTTGCAAGCTTGTGTGTCAGATGGCATGTGTATCCAGTCTGGTAAGGGCCTTTATGATGTTCCCATTACTTCTGAAAATGTTGATGTTATGCGGTCTGAAACTGTCTCCCCTCATCAAGATAGTAACATGAATTCTCCAAGCTGTGATAAACAGATTTTAGATCATAATATGGAATTGTCTGTGGACATTGTTAAAGCTGCATCAAATGATATGTGGGACGAAAAAGATGAATGGCTGGAAGGCCTAGTCACTGATAAGGTGGGGAGCCATCTGCTGCAGTCACTGGAGGACGTTCCAAACTGCACCATAAAGAATGGTCTGGCTCAAGGGGTTTTACATCCTTCTGGACATATAAGGAATGAGGGTGGACGAGCTGTTCAAGCTTCAGAATTGAAGACGGATGGTACTTATCTGTCAGCAGATGCGATCTTGAAAAAAAAGATGCGCAGGAAGTCTAAAAAGATATCCGAAATCAAACTGAGCACATTATACAGAAATGAAATTTTAGGTCTGCCCTTGCCTAGTAGAGCTGAACTGCAGAATATCCACGAACATGACCCCGAGTTAGAGTCAGAAGAAATGGAGGAGTCCTTGATGGCCATTGCCAGAAACAATGGTGGTTGCAAAAGGTCCTCATCTCTCAGCTCTTCCCAGTGTCAAAGTGAAAGAAAACGGTCTAAGTTCAAAAAGTTCCACCACAGTGTTGATAGTTCGGGAGGATTGGTTCAAGTGGTTCATGATGGTGATTTTTCAGAGGAGTTCAACATTGAGAATAATACTAATAATGAATCTCTGCATGTAAATATTGGTTCTAAGCCTGAAACCAAATATGGAAATGGACAAAGGAATTCAAGCAGTTGCCAGATTGAAGATGATGATCTTTTGATTGCAGCTATTATACAAAACAGAAATGCCAGCTCCAGCACAAAGCGTCCAAGCTCAAAAATGAAGGTAAAAAAATCAAAAGCGCCGAATAAGCTCAAGAAAAGAAAGGGGAATTGCAAGTTGCTGCCAAGAAGCGTGGGCAAGGGTGGAAGGCAGGCCACAGATGGAAAGTGGACATCCTCAGGAGTAAGAACGGTGTTGTCCTGGTTAATAGATGCTGGTGTTATATCTTCCAATGATGTTATCCAGTACCGTAATCTCAAGGATAATGCTGTGGTGAAGGATGGTTATGTAACCCGTGACGGGATTGTTTGCAAATGTTGCACAGAGCTGTTTTCAGTTTGTAACTTCAAAATTCATGCTGGTTTCAAGTTGAATCGGCCCTGTCGCAACCTATTCATGGAGTCTGGCAAGTCATTCACTTTGTGCCAGCTTCAGGCCTGGTCTACTGAATATAAAGTTAGGAAAGGTGGCATAAAAAATGTACAAATTGATGAAATTGACCAAAATGACGATTCGTGTGGATTATGCGGGGATGGGGGTGAATTGATATGCTGTGATAACTGCCCATCTACTTTTCATCAGGCTTGCTTGTCTGCAAAGGAGCTCCCTGAAGGCAATTGGTATTGCCCAAACTGCACTTGCCGGATTTGTGGAGATTTGGTCAAGGACAGAGAGGCATCAAGTTCTTTTCTTGCATTAAAATGTTCCCAGTGCGAGCACAAATATCATATGCCATGCTTGAAAGAAAAGTGTGTAAAAGAAGTGGGTGGTGATGCTCGGTTTTGTGGTGAGAATTGCCAAGAGATCTACTCAGGTCTTCAGGGTCTCCTTGGGTTTGTCAACCATATTGCTGATGGCTTCACTTGGACACTCTTGAGATGCATCCATGATGACCAGAAGGTTCATTCTTCCCAAAAGCTTGCTCTGAAGGCCGAATGTAACTCAAAATTAGCTGTTGCTCTGACTATAATGGAGGAGTGCTTTTTGTCCATGGTGGATCCACGAACAGGGATAGACATGATACCCCATGTGTTATACAACCGGGGGTCAGATTTTGCACGTCTGAACTTTAATGGGTTTTACACAGTGGTTTTGGAGAAAGATGATGCGCTGGTATCTGTAGCATCTATCAGGGTACATGGAGTGACAGTTGCAGAGATGCCCCTGATTGCAACTTACGAAAAATTTCGTAGCAAGGGGATGTGTCGACTACTTATGAATGCCATTGAAAAGATGCTAAAATCTGTCAAGGTCGAAAAGATTGTGGTTGCTGCTATTCCAAGTTTGGTGGAGACGTGGACTCTGGGTTTTGGCTTCAAACCCGTGGAGGATGATGAAAAAGCAAGTCTGAAGAAAATCAACTTGATGGTGTTTCCTGGAACAATACTGCTGAAAAAGTCTTTGTATGAGAACCAAGAAACAGATAAACAAGCAGGAACAGATTGTGCGTTACCCTTAGAAGCGGCAAAACTGACTAAGTTGGATGCTAGTATCAAAGAAGAGTTAGTCATCGAGTCTGCACAACTATCTAATGCGAACTGTTGTGTTGAAGGAGGTGCTGAAATGGAGATTGGATGCCCCGACTCCCAGAATCTGCAAGTAGGTGAGTCTTATGAAGAACTGGCTTCAACAATAGTGGACAGCCAACTTGAACTGGCTCCCAATGTTGAATCTGAAAGTGTGTATGATGTGAGACAACTTTCTCCGATGGAACAGTCGCAGAAAGCCGATATGTTGGATGAGCAGCAGTAA 4251 0.4197 MLLSKEIEDLHDDDFEGSNDECRIFREVFFRNNTDSASKRFLVTGFINFECEDNKQTDTSLCSNSENSAVTSQSSKDLYMGDSCNVPEDSRGTSGPVSFSERFTLVEGNDHDVNVKRMKLSDDELCNLKPDFEKFFDSSAPLKEIVSGMSPPASESVYKKVRCHLVESSDQGVKYRCYLLKRHLQMERACSFSDRDAMKCRLSSLDGSDRKEVVVSKAIASPVSQESFATKLLVASPPVAVADKSGPPLFSEDRPKKSVFLELDALYASPSVESLKDPRPLLHDHINHVLIAAGWSIEKRKRNSRPHEESVYRSPEGRPIREFPKAWRLCGENLFADRYSLVQENDAKEWTDISQFWSNLSNVLTYIDKKINEAETAITLAHRWSLLDPFITVVFIDKKIGALRKGNAVTAKRSIVVEKKQKNNAVLVMKDVGCIKNQFARRDLPAAISDSSLASGSALTVFEGTYHMADEKGEQFGDGRPLKFGQHAQKGAVRTLKGVSIYMADEKGTCSIDTVDAMANQGGGMLEKKRSSLDPSSLQACVSDGMCIQSGKGLYDVPITSENVDVMRSETVSPHQDSNMNSPSCDKQILDHNMELSVDIVKAASNDMWDEKDEWLEGLVTDKVGSHLLQSLEDVPNCTIKNGLAQGVLHPSGHIRNEGGRAVQASELKTDGTYLSADAILKKKMRRKSKKISEIKLSTLYRNEILGLPLPSRAELQNIHEHDPELESEEMEESLMAIARNNGGCKRSSSLSSSQCQSERKRSKFKKFHHSVDSSGGLVQVVHDGDFSEEFNIENNTNNESLHVNIGSKPETKYGNGQRNSSSCQIEDDDLLIAAIIQNRNASSSTKRPSSKMKVKKSKAPNKLKKRKGNCKLLPRSVGKGGRQATDGKWTSSGVRTVLSWLIDAGVISSNDVIQYRNLKDNAVVKDGYVTRDGIVCKCCTELFSVCNFKIHAGFKLNRPCRNLFMESGKSFTLCQLQAWSTEYKVRKGGIKNVQIDEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSAKELPEGNWYCPNCTCRICGDLVKDREASSSFLALKCSQCEHKYHMPCLKEKCVKEVGGDARFCGENCQEIYSGLQGLLGFVNHIADGFTWTLLRCIHDDQKVHSSQKLALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHVLYNRGSDFARLNFNGFYTVVLEKDDALVSVASIRVHGVTVAEMPLIATYEKFRSKGMCRLLMNAIEKMLKSVKVEKIVVAAIPSLVETWTLGFGFKPVEDDEKASLKKINLMVFPGTILLKKSLYENQETDKQAGTDCALPLEAAKLTKLDASIKEELVIESAQLSNANCCVEGGAEMEIGCPDSQNLQVGESYEELASTIVDSQLELAPNVESESVYDVRQLSPMEQSQKADMLDEQQ* 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0142 1416 CDD NAT_SF 1196 1256 - -
Vvi19g0142 1416 SMART PHD_3 1047 1100 IPR001965 -
Vvi19g0142 1416 SMART PHD_3 1005 1046 IPR001965 -
Vvi19g0142 1416 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1152 1302 IPR000182 GO:0016747
Vvi19g0142 1416 PANTHER PHD FINGER FAMILY PROTEIN 1 1311 - -
Vvi19g0142 1416 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1155 1277 IPR016181 -
Vvi19g0142 1416 CDD PHD2_CHD_II 1005 1045 - -
Vvi19g0142 1416 MobiDBLite consensus disorder prediction 1394 1410 - -
Vvi19g0142 1416 Gene3D - 1176 1288 - -
Vvi19g0142 1416 Pfam Tify domain binding domain 928 978 IPR032308 -
Vvi19g0142 1416 ProSiteProfiles Zinc finger PHD-type profile. 1003 1048 IPR019787 -
Vvi19g0142 1416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 991 1086 IPR013083 -
Vvi19g0142 1416 MobiDBLite consensus disorder prediction 841 861 - -
Vvi19g0142 1416 Pfam PHD-finger 1006 1047 IPR019787 -
Vvi19g0142 1416 SUPERFAMILY FYVE/PHD zinc finger 987 1046 IPR011011 -
Vvi19g0142 1416 MobiDBLite consensus disorder prediction 1394 1416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0142 Vvi-Chr19 1594460 1607905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0142 1 475 PHD Transcription Factor Family AT3G14980 35.294 2.96e-59 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi19g0142 TDBD 8.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0142 - - vvi:100248637 2768.8