Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0139 ATGTCGCATTCCGGGAAACCCATGTCGGAGGTAGGGTTGGGTGCAGTGGCGGATCGGTTTCGGGAGACGTTAAACTGCGACAACAACAAGCCTGATTTTAAGGAACTCGATCTGGGCTCGCCGGTATCGCCGCTGCGGACTCGACGGAGTGGCCCGGCGGGGAGTGGAGTCACCACTACCAGCAGTAGCTCCAGTTCGTCCGGATCGGTGTCATGCCGGAATGCGAACAACCAGCTTGCGAAACGAGCGGATGGCGCCGGGAACAACCACTCCGGCGAGCTTTCAGGGTCGAGCGAGAGTAGCCCGACGGCCGCCGAGAGCGTTCGATCTGGCGGGGCTTCTAGGAATTTTAAGCCCGGCCACGGGAGGTCCGATTCCGGTGGCGCCCACCCGTTAATCTATTCCGGCGGTGGCTCCGTGAATTCTCCGTCCGTCAACGTTTTCCCGACGGGCAACATTTGTCCATCTGGGAAGATTTTGAAAACTGGCATGGCCAATCGGAGCTCGAGAAGCGACGTTTTGGGGTCCGGAATGGGCAATTATGGCCACGGCAGCATAATGCGGGGCGGCGCCGCCCCAAAATCCGGCGATCCTGGCGTCACATATTCAAAGGGCAATGCCGGTTGCGAATCTGCGAAGAGGGCAATGTCGAGTTTGGATCCAGAAGAGGTGAAACAGGCCGGGAATGATCAATACAAAAGGGGCCATTTTCGAGAGGCATTGAGCTTTTACGATCGAGCAATTGCATTGTCTCCGGGAAATGCCGCTTACCACAGCAACCGGGCGGCGGCATTGACGGGTCTACACCGGTTGCCGGAGGCGGTGAGGGAATGTGAGGAGGCCGTGAGGTTGGATCCAGGGTATTGGAGAGCTCATCAGCGTTTAGCATCACTTTACCGTAGGTTAGGGCAAGTAGAAAATGCGAGGAGGCACCTTTTTGTTCCTGGGCAGCAACCTGATCCAGCAGAGTTACAGAAGTTACTAGAAGTAGAGAAGCATCTTAGTAAATGCTCTGATGCCCGGAGGATCGGTGATTGGAGGAGTGCATTGAGGGAAGGTGATGCTGCCATTGCTGCTGGAGCTGACTCTTCTCCCCAGATCTTTACGTGTAGAGTAGAAGCCCATTTAAAGCTCCATCAACTTGACGATGCAGAATCAAACTTATCATACATTCCCAAATCTGAACCATCAGGACAGTCATCCTCACAGGCTAAGTTTTTTGGGATGCTTTCTGAAGCTTACCTACATTTTGTTCAGGCCCAGATTGAGATGGCATTAGGAAGGTTTGAGAATGCAGTTACAGCTGTGGAGAAAGCTGGGCAGATTGATCCCCGCAATGTTGAAGTTGCTGTGCTTCTCAACAATGTGAGGATGGTTGCAAGAGCTCGTGCCCGTGGCAATGATCTCTTCAAATCTGAAAGGTTCACTGAAGCTTGCGCAGCATATGGTGAAGGCCTCAGGCTGGATCCTTCCAACTCTGTTCTTTATTGCAACAGAGCAGCTTGCTATTATAAGCTTGGAATGTGGGAACGATCTGTTGATGACTGCAATCAGGCCCTCTACATCCAACCCAATTACATGAAAGCTCTTCTCCGAAGGGCTGCCTCATACAGCAAGCTAGAAAGGTGGGTTGATGCTGTCAGAGATTATGAGCTTTTGAGGAGGGAACTCCCAAATGACAATGATGTAGCTGAGTCTCTATTCCATGCCCAAGTTGCATTGAAGAAATCGCGTGGGGAAGAAGTCTATAATATGAAGTTTGGTGGCGAAGTGGAGGACGTATCAAGTCTTGAGCAGTTCAAGTCTGCAATATCTTCACCTGGTGTGTCCATTGTCCTTTTCAAAGCAGCCACCAATCCGCAAAGCGAGCAGATATCTCCGTTTGTAGACACCCTTTGTGGTCGATACCCATCATTAAGTTTTCTCAAGGTTGATGTGGAACAGAGCCCAGCAATAGCAAGTGTAGAGAATGTCAGGATACTGCCAACATTCAAGATCTATAAAAATGGTAGCCGAGTGAAGGAAATCATCTGCCCTACTCGCGAAGTGTTGGAATCCTCGGTGAGACATTACGGTTTTTAG 2082 0.5125 MSHSGKPMSEVGLGAVADRFRETLNCDNNKPDFKELDLGSPVSPLRTRRSGPAGSGVTTTSSSSSSSGSVSCRNANNQLAKRADGAGNNHSGELSGSSESSPTAAESVRSGGASRNFKPGHGRSDSGGAHPLIYSGGGSVNSPSVNVFPTGNICPSGKILKTGMANRSSRSDVLGSGMGNYGHGSIMRGGAAPKSGDPGVTYSKGNAGCESAKRAMSSLDPEEVKQAGNDQYKRGHFREALSFYDRAIALSPGNAAYHSNRAAALTGLHRLPEAVRECEEAVRLDPGYWRAHQRLASLYRRLGQVENARRHLFVPGQQPDPAELQKLLEVEKHLSKCSDARRIGDWRSALREGDAAIAAGADSSPQIFTCRVEAHLKLHQLDDAESNLSYIPKSEPSGQSSSQAKFFGMLSEAYLHFVQAQIEMALGRFENAVTAVEKAGQIDPRNVEVAVLLNNVRMVARARARGNDLFKSERFTEACAAYGEGLRLDPSNSVLYCNRAACYYKLGMWERSVDDCNQALYIQPNYMKALLRRAASYSKLERWVDAVRDYELLRRELPNDNDVAESLFHAQVALKKSRGEEVYNMKFGGEVEDVSSLEQFKSAISSPGVSIVLFKAATNPQSEQISPFVDTLCGRYPSLSFLKVDVEQSPAIASVENVRILPTFKIYKNGSRVKEIICPTREVLESSVRHYGF* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0139 693 CDD TRX_family 598 688 - -
Vvi19g0139 693 FunFam TPR repeat-containing thioredoxin TTL4 585 692 - -
Vvi19g0139 693 Gene3D Tetratricopeptide repeat domain 220 579 IPR011990 GO:0005515
Vvi19g0139 693 SMART tpr_5 493 526 IPR019734 GO:0005515
Vvi19g0139 693 SMART tpr_5 527 560 IPR019734 GO:0005515
Vvi19g0139 693 SMART tpr_5 459 492 IPR019734 GO:0005515
Vvi19g0139 693 SMART tpr_5 255 288 IPR019734 GO:0005515
Vvi19g0139 693 SMART tpr_5 413 446 IPR019734 GO:0005515
Vvi19g0139 693 SMART tpr_5 221 254 IPR019734 GO:0005515
Vvi19g0139 693 MobiDBLite consensus disorder prediction 25 135 - -
Vvi19g0139 693 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Vvi19g0139 693 Gene3D Glutaredoxin 585 691 - -
Vvi19g0139 693 Pfam Tetratricopeptide repeat 227 287 - -
Vvi19g0139 693 Pfam Tetratricopeptide repeat 495 526 IPR001440 GO:0005515
Vvi19g0139 693 Pfam Thioredoxin 597 684 IPR013766 -
Vvi19g0139 693 SUPERFAMILY Thioredoxin-like 496 692 IPR036249 -
Vvi19g0139 693 SUPERFAMILY TPR-like 222 311 IPR011990 GO:0005515
Vvi19g0139 693 MobiDBLite consensus disorder prediction 52 110 - -
Vvi19g0139 693 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Vvi19g0139 693 SUPERFAMILY TPR-like 337 563 IPR011990 GO:0005515
Vvi19g0139 693 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 690 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0139 Vvi-Chr19 1566901 1570258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0139 458 603 U-box Gene Family AT3G07370 27.869 4.40e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0139 - - vvi:100255533 1294.64