Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0136 ATGGATCATCCTCCGCCACCAATCCAAAACCTAGATCCTCAGCCCCCACCTCCTCCTGAAACCCTAATTCCTTCCTATCAATACCCATCTCCACCTTCCCAATCCCTTGATTCCTCCTTTCAAAACCCCTCCAAAACCCTTGCTTCAGATCATCCTGATTCGATTTCTCCAAATTCTGATTCTCAAAACCTCGCTAGTTTTTCCAATAATGGCCAGACCCATTTCGAAGGGCCCAAGTTCGACCTCCAGAAGCCCTTGGTTTCTGAAAATGGCGTCACCAACACCCAGAGCGGCACCGACAAGGACTACTCCGGCGGCGAGGAGGAAACTACCAGTCGTCGGCGCAGGCGGAGCCGCTGGGATCCGCCGTCCGATTCTGGAAACCAAACAGCCGGTGAAGCAGCCGAAGGTACCGGGGCCAGGAAGAGGAAATCGAGGTGGGCGGATGATGAGCCGAAGCCATTGATTCAATTGCCGGATTTCATGAAAGATTTCACCGGAGGTATTGAATTTGACCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGCATGTTGCAATCTGGTTTGCCGTTGGATGATCGGCCTGAGGGGGCGAGGTCGCCTTCGCCTGAGCCTATATATGATAATATGGGAATTAGGATCAACACCAGAGAGTATCGGGCTCGCGAGAGATTGAATCGTGAGAGACAGGAAATTATATCACAAATCTTGAAACGAAACCCGGCATTTAAGCCCCCGGCTGATTATAGGCCCCCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCGGGCTATAACTTTATTGGGCTTATAATTGGACCAAGGGGGAACACACAGAAAAGAATGGAGAGGGAGACGGGGGCAAAAATTGTGATTCGGGGAAAAGGGTCAGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTAAAACCTGATCCTTCTGAGAACGAGGATTTGCATGTATTGGTTGAGGCGGATACACAGGAAGCACTTGATGCAGCTGCCGGGATGGTGGAGAAATTATTGCAGCCAGTTGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAGTTAGCAGCCCTAAATGGGACAATAAGGGATGAGGAGTACTGTAGATTGTGTGGAGAGCCGGGGCACCGGCAATATGCTTGTCCTTCACGAACTTCGACGTTTAAAAGTGATGTACTATGTAAGATATGCGGTGACGGTGGGCATCCTACCATTGATTGTCCGGTGAAGGGGACAACAGGGAAGAAAATGGATGATGAGTATCAGAACTTTTTGGCTGAGCTGGGAGGGACAGTACCAGATTCTTTGATAAAGCCAAACAATGCATTGCCAATTACAGGTTCAAGTGGTTCTGGTAGCAATCCTCCTTGGTCTAACAATGCTGGTGGTACAGCACAAGCTGGCTTAGGGGCAAATGGAGCCAAACCCATTAAGGAATATGATGATACAAACTTGTACATTGGGTATTTGCCACCTACTCTTGAAGACGATGCTTTGATTAGGTTGTTTTCACCCTTTGGTGATATTGTGATGGCTAAGGTTATTAAGGATAGGGTTACTGGATTGAGCAAAGGGTATGGTTTTGTCAAGTATTCTGATGTTCAACAAGCCAATAGTGCAATTGCCAGTATGAATGGTTATCGTTTAGAGGGAAGAACAATTGCTGTGAGGGTTGCAGGTAAGCCTCCTCAGCCTGCTGTCCCTCCAGGTCCTCCCCCTCCTGCAATGCCTACATATCCAAGTTCAAATCAGGCTGTTGGTGCCTATCCATCCCAGCAATTTACCGCAGGTGGTCCCCTTGGGAATACTCCACCACCGAGCTATGCCCCTGGTGCTCCAGTTCCATGGGGACCGGTTCCTCCTCCTTATGCCCCTTACCCTCCTCCTCCCCCTGGGTCAAGCTTATACACTCCAGTCCCAGGTCAACCTGTGCCTCCTTATGGTGTGCAATATCCTCCTCCTCCTCCTCCTACACAGTCAGTTTCTGCTGGTGCCCCAGCTCAGACTGTGGTGTCTAGTGAAGCACAACAGAATTTCCCTCCAGGAGTGCAGTCTGAAAGTGGTTCTTCTGTTCAATCTGTACCTACCAGTGTTTATGGGAGCTCCTTATCTGCAATACCACCAAATCCTCAACCTGCATATTCAACATCTTCATATGGTTACTCTTATTATGGTGTTGCTCCTCCTCCACCTCTTCCTGTACCTTATCCAATGGCAGATCAATCGCAGAACATGGGAAATGCGCCTTGGAGCTCGGCTCCACCAGTGCCTCCACCTGTTCCACCAGCAGAAAAGAAAACCCATGGTACTGATGCAGAATATGAGAAATTCATGGCGGAGATGAAATGA 2385 0.4851 MDHPPPPIQNLDPQPPPPPETLIPSYQYPSPPSQSLDSSFQNPSKTLASDHPDSISPNSDSQNLASFSNNGQTHFEGPKFDLQKPLVSENGVTNTQSGTDKDYSGGEEETTSRRRRRSRWDPPSDSGNQTAGEAAEGTGARKRKSRWADDEPKPLIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNRERQEIISQILKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCPVKGTTGKKMDDEYQNFLAELGGTVPDSLIKPNNALPITGSSGSGSNPPWSNNAGGTAQAGLGANGAKPIKEYDDTNLYIGYLPPTLEDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDVQQANSAIASMNGYRLEGRTIAVRVAGKPPQPAVPPGPPPPAMPTYPSSNQAVGAYPSQQFTAGGPLGNTPPPSYAPGAPVPWGPVPPPYAPYPPPPPGSSLYTPVPGQPVPPYGVQYPPPPPPTQSVSAGAPAQTVVSSEAQQNFPPGVQSESGSSVQSVPTSVYGSSLSAIPPNPQPAYSTSSYGYSYYGVAPPPPLPVPYPMADQSQNMGNAPWSSAPPVPPPVPPAEKKTHGTDAEYEKFMAEMK* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0136 794 Gene3D - 172 249 IPR047086 -
Vvi19g0136 794 SMART kh_6 258 350 IPR004087 GO:0003676
Vvi19g0136 794 FunFam splicing factor-like protein 1 473 577 - -
Vvi19g0136 794 Gene3D - 465 570 IPR012677 -
Vvi19g0136 794 Gene3D K Homology domain, type 1 250 378 IPR036612 GO:0003723
Vvi19g0136 794 SMART c2hcfinal6 379 395 IPR001878 GO:0003676|GO:0008270
Vvi19g0136 794 SMART c2hcfinal6 405 421 IPR001878 GO:0003676|GO:0008270
Vvi19g0136 794 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 566 IPR000504 GO:0003723
Vvi19g0136 794 MobiDBLite consensus disorder prediction 27 76 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 674 722 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 137 154 - -
Vvi19g0136 794 SUPERFAMILY Retrovirus zinc finger-like domains 376 422 IPR036875 GO:0003676|GO:0008270
Vvi19g0136 794 MobiDBLite consensus disorder prediction 592 612 - -
Vvi19g0136 794 FunFam splicing factor 1 378 431 - -
Vvi19g0136 794 Pfam KH domain 273 343 IPR004088 GO:0003723
Vvi19g0136 794 FunFam splicing factor-like protein 1 250 378 - -
Vvi19g0136 794 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 258 384 IPR036612 GO:0003723
Vvi19g0136 794 CDD KH-I_BBP 257 350 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 194 213 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 457 477 - -
Vvi19g0136 794 SMART rrm1_1 496 569 IPR000504 GO:0003723
Vvi19g0136 794 PANTHER RNA-BINDING PROTEIN RELATED 106 619 IPR045071 -
Vvi19g0136 794 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 573 IPR000504 GO:0003723
Vvi19g0136 794 MobiDBLite consensus disorder prediction 747 781 - -
Vvi19g0136 794 Gene3D - 379 431 - -
Vvi19g0136 794 Pfam Splicing factor 1 helix-hairpin domain 143 254 IPR032570 -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 1 154 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 303 323 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 87 101 - -
Vvi19g0136 794 ProSiteProfiles Type-1 KH domain profile. 273 345 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 573 621 - -
Vvi19g0136 794 ProSiteProfiles Zinc finger CCHC-type profile. 380 395 IPR001878 GO:0003676|GO:0008270
Vvi19g0136 794 MobiDBLite consensus disorder prediction 102 122 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 646 722 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 574 591 - -
Vvi19g0136 794 MobiDBLite consensus disorder prediction 646 673 - -
Vvi19g0136 794 SUPERFAMILY RNA-binding domain, RBD 488 587 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0136 Vvi-Chr19 1509691 1512075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0136 495 642 Eukaryotic Initiation Factors Gene Family AT3G16380 28.488 3.39e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0136 K13095 - vvi:100267539 1314.67