Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0132 ATGGAGATCATAAACCCTCAATCTCAATCTCAAAAACCCAAGAAGAATCCAAGAAACCCAGCAAAAAGGAGGAAGATACATGAAGATTTTGATCATCGCGTAGAAGTATGCAGCAAAGAAGATGGGTTTCTGGGTTCTTACTATGAGGCCAAGGTTCTCGGGAAAGTTGGCAGAAACAAGCTCATGGTGGAGTACAAAACCTTACTGTCAGATGAAGATGGGCAGCAGCCACTCAAGGAGATTGTTGAAGCTGCAGAAGTGAGGCCTGTCCCTCCAGTGATCCTGGTTACTGGGTTCGAAGTGCTGGATACGGTGGATGCTTTCGACAACGATGGATGGTGGGTGGGGAGGATCAGCGGGAGCTATGAAGATGGGAAGTACTTTGTGTATTTTGAGAGTTCAGGGGATGAGCTTGCTTACCCTATTCACAGGCTTAGGGTTCATCAAGAATGGGAGGATGGGCAGTGGCTTGTAGTTCGGTAG 483 0.4741 MEIINPQSQSQKPKKNPRNPAKRRKIHEDFDHRVEVCSKEDGFLGSYYEAKVLGKVGRNKLMVEYKTLLSDEDGQQPLKEIVEAAEVRPVPPVILVTGFEVLDTVDAFDNDGWWVGRISGSYEDGKYFVYFESSGDELAYPIHRLRVHQEWEDGQWLVVR* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0132 160 CDD Tudor_Agenet_AtDUF_rpt2_4 101 147 - -
Vvi19g0132 160 MobiDBLite consensus disorder prediction 1 15 - -
Vvi19g0132 160 MobiDBLite consensus disorder prediction 1 27 - -
Vvi19g0132 160 SMART agenet_At_2 97 153 IPR014002 -
Vvi19g0132 160 SMART agenet_At_2 26 95 IPR014002 -
Vvi19g0132 160 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 31 157 - -
Vvi19g0132 160 CDD Tudor_Agenet_AtDUF_rpt1_3 33 92 - -
Vvi19g0132 160 Gene3D - 15 99 - -
Vvi19g0132 160 Pfam Agenet domain 32 92 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0132 Vvi-Chr19 1477656 1478138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0132 38 159 PHD Transcription Factor Family AT5G58610 30.921 5.22e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0132 - - vvi:100257263 315.849