Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0118 ATGGCAGGAACCGGACCTCTGACGCAGGACTGGGAACCGGTGGTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGATAAGAAACTCACCCAGGCTCAACTAGCTCAAATGATTAATGAGAAGCCCCAAGTGATACAAGAGTATGAGTCAGGAAAAGCCATTCCAAATCAACAGATAATCACCAAACTGGAAAGGGCTCTTGGTGTGAAGCTGCGAGGAAAGAAGTGA 429 0.5035 MAGTGPLTQDWEPVVIRKKPLNAAAKKDEKAVNAARRMGAEIETVKKSSAGTNRAASSSTSLNTRKLDEETENLTHERVPTELKKSIMQARLDKKLTQAQLAQMINEKPQVIQEYESGKAIPNQQIITKLERALGVKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0118 142 MobiDBLite consensus disorder prediction 46 64 - -
Vvi19g0118 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vvi19g0118 142 Gene3D - 71 142 IPR010982 GO:0003677
Vvi19g0118 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 3 142 - -
Vvi19g0118 142 CDD HTH_XRE 87 138 IPR001387 -
Vvi19g0118 142 SMART mbf_short4 86 141 IPR001387 -
Vvi19g0118 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Vvi19g0118 142 MobiDBLite consensus disorder prediction 43 77 - -
Vvi19g0118 142 FunFam Multiprotein bridging factor 1 71 142 - -
Vvi19g0118 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vvi19g0118 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0118 Vvi-Chr19 1368093 1370559 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vvi19g0118 MBF1 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0118 K03627 - vvi:100854999 274.248