Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0117 ATGTCGTTGCGGAGATCGATCCTCTCTCGAAGGACCTTCGCGCTATCCAAATCCTTCAAGGAATTTAGAACCCTAGACTCCTCCGAGTCGAGATCCGAGCCTGCGCTGCGGCCCAGAATCGTAGACGATGACGTTTCCGACGAGGAGGAGGAGGATTCCGGTGACGGCGCCGCCGGAGACTCTGGAATCCGGAGGGTGGACTCCGGACGCGGCGATTCGTGGTCCACAATGCTACCGGAGCTGCTCGGGGAGATCATTCAGCGAGTGGAAGCAAGCGAGAACCGGTGGCCGACTCGCAGAAACGTCGTGTCGTGCGCCTGTGTGTGCAAGAGGTGGAGAGATATTACCAGAGAGGTCGTGAGGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAGAATTCAACGTTTTACCTTTACCTTGCTCTTAGTTCGTCATTCACAGATAAGGGGAAGTTTCTCTTAGCTGCTCGAAGATATAGGCATGGTGCTCACACCGAGTACATAATATCACTTGATGCTGATGACATATCTCAAGGAAGTAATGCTTATGTTGGAAAGTTAAGGTCGGATTTCCTTGGAACCAACTTCGCAATTTATGACAGCCAGCCCCCACACAGCGGTGCAAAGCCCTCAAGCAGCAGAGCTGGCCGACGTTTCGCGAGCAAGCAAATAAGCCCCCAAGTTCCAGCAGGCAACTTCGAGGTTGGACAGGTCTCTTACAAGTTCAACCTCTTGAAATCAAGAGGACCAAGGAGGATGGTCTGCTCACTCCGCTGTCCATCCTCAGGAGAAACTGCCAACAACAAATCTCCAGACAACTCTGACTTGAAAAAACCCGACCCTGCTGCTCCTGGGTGCTCAATCTTGAAGAATAAAGCACCAAGGTGGCATGAACATCTGCAATGTTGGTGCTTGAATTTCCATGGTCGGGTGACTGTAGCTTCTGTGAAGAACTTCCAACTAGTTGCAACAGTTGACCAAAGCCAGCCAGGCGGTAAAGGAGATGAAGAAACTGTCCTCCTCCAGTTTGGTAAGGTCGGCAACGACACTTTCACCATGGACTATCGGCAACCCTTATCAGCCTTCCTCGCATTTGCCATTTGCCTTACTAGCTTTGGTACGAAACTGGCCTGTGAGTGA 1206 0.5124 MSLRRSILSRRTFALSKSFKEFRTLDSSESRSEPALRPRIVDDDVSDEEEEDSGDGAAGDSGIRRVDSGRGDSWSTMLPELLGEIIQRVEASENRWPTRRNVVSCACVCKRWRDITREVVRSRLDSGQITFPSCLKQPGPRNSEHQCLIKRNKKNSTFYLYLALSSSFTDKGKFLLAARRYRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFAIYDSQPPHSGAKPSSSRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLRCPSSGETANNKSPDNSDLKKPDPAAPGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGNDTFTMDYRQPLSAFLAFAICLTSFGTKLACE* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0117 401 Gene3D - 69 124 - -
Vvi19g0117 401 PANTHER TUBBY-RELATED 21 399 - -
Vvi19g0117 401 Pfam F-box domain 79 120 IPR001810 GO:0005515
Vvi19g0117 401 MobiDBLite consensus disorder prediction 26 43 - -
Vvi19g0117 401 SUPERFAMILY F-box domain 71 117 IPR036047 GO:0005515
Vvi19g0117 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 329 345 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 205 229 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 311 328 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 189 205 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 254 281 IPR000007 -
Vvi19g0117 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Vvi19g0117 401 CDD F-box_AtTLP-like 74 118 - -
Vvi19g0117 401 Gene3D Tubby Protein; Chain A 130 401 IPR025659 -
Vvi19g0117 401 MobiDBLite consensus disorder prediction 26 71 - -
Vvi19g0117 401 MobiDBLite consensus disorder prediction 279 302 - -
Vvi19g0117 401 MobiDBLite consensus disorder prediction 224 243 - -
Vvi19g0117 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Vvi19g0117 401 ProSitePatterns Tub family signature 1. 329 342 IPR018066 -
Vvi19g0117 401 SUPERFAMILY Tubby C-terminal domain-like 127 401 IPR025659 -
Vvi19g0117 401 Pfam Tub family 135 396 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0117 Vvi-Chr19 1360684 1367018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0117 1 401 TUB Transcription Factor Family AT1G53320 68.949 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi19g0117 Tub 3.2e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0117 K19600 - vvi:100854941 786.178