Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0115 ATGGTAAATATTGCACGTCGTCGGAGACTGCTTCAGTCATCTTATAATCTCCCTGCTGCACCTGTGAGTAGCACTGAGCTCTCGCAACTAACAACACCTTTTACTCTAAGCAGTGGAGCTTTCCCTGCAGTTAACAAACACTCTCCTCTACCATCAAACCCGTCTCTTCCTTCACCGCCTGACCTGTCTCTTAGTGCTCCTAATCCTAATACCAAGTCTCCCCAAAAGCCAGTTCACCAACCTTCAGCTCATCATTCTCCTGAAAGGAACTATTTTCACGCAATTCCTGGAGTGGTCTTTTTGTTTGTTCTTTGTGCAGTAATGCTCTACATTTGTCGGAAAAAAGCAGCAAAAGCAATAGCTCCTTGGAAGACTGGTATAAGTGGCCAGTTGCAGAAGGCACTTGTCACAGGTGTTTCCAAGCTGAACAGGGCAGAGCTAGAAGCTGCTTGTGAGGATTTCAGCAATATTCTTGATACTTTTCCTGGCTGTAAAGTATACAAGGGGACGCTTTCAAGTGGTGTTGAGATTGCTGTGGCCTCAACTACTATTGCATCTTTCAAAGAATGGTCAAGACATGCAGAAGTGGCATTTAAGAAAAGGATAGAGAAACTATCAAGAATAAACCACAGGAACTTCGTAAATATACTAGGCTACTGTCAAGAGGACGAGCCTTTCACGAGGATGATGGTGTTTGAGTATGCCCCCAATGGAAACCTCTATGAGCATCTACATGTAAAAGAAGTTGAACATCTTGACTGGAATGCTAGGGTGAGAATTATAATGGGAGTGGCCTATTGTCTTGAACACATGCACCATGTGCTGAACCCTCCTTTAGTTCATCCCCATCTGCATTCAAGTTCTATTCTTTTGACAGAAGATTGTGCTGCAAAGATTGCAGAAATAAGTTTCTGGATGGATCTGGCAACCAAATCAAAGATAGCAGATGAAGAACAATCAGAGCATTCCCTGTTGCACCCAGAAGCTGACCCTGAATCAAATGTCTACAGCTTTGGAATAATGCTGCTAGAGATCATTTCTGGGAAGGTCCCTTACAATGAAGAACAAGGATCCCTTGTGAACTGGGCTACTGAATACTTAAATGGTCAGAAGAGGATCAGCTACATGATAGATCCCTCACTCAAGTCTTTCAAGAATACTGAGCTTGATGTTATATGTGAGATAATCCAGGAATGCATAAATGAAGAACCAAAGCATAGGCCAACAATGAAAGACATAGTCTCAAGCCTAAGGAATGTGATTGCAGTCTCCCCAGATCAAGCAACTCCAAAACTCTCTCCCCTATGGTGGGCAGAACTTCAAATCCTTTCAGTTGAGGCCAGTTAA 1347 0.4313 MVNIARRRRLLQSSYNLPAAPVSSTELSQLTTPFTLSSGAFPAVNKHSPLPSNPSLPSPPDLSLSAPNPNTKSPQKPVHQPSAHHSPERNYFHAIPGVVFLFVLCAVMLYICRKKAAKAIAPWKTGISGQLQKALVTGVSKLNRAELEAACEDFSNILDTFPGCKVYKGTLSSGVEIAVASTTIASFKEWSRHAEVAFKKRIEKLSRINHRNFVNILGYCQEDEPFTRMMVFEYAPNGNLYEHLHVKEVEHLDWNARVRIIMGVAYCLEHMHHVLNPPLVHPHLHSSSILLTEDCAAKIAEISFWMDLATKSKIADEEQSEHSLLHPEADPESNVYSFGIMLLEIISGKVPYNEEQGSLVNWATEYLNGQKRISYMIDPSLKSFKNTELDVICEIIQECINEEPKHRPTMKDIVSSLRNVIAVSPDQATPKLSPLWWAELQILSVEAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0115 448 PANTHER PROTEIN MALE DISCOVERER 2 12 446 - -
Vvi19g0115 448 MobiDBLite consensus disorder prediction 65 80 - -
Vvi19g0115 448 Gene3D Phosphorylase Kinase; domain 1 123 234 - -
Vvi19g0115 448 ProSiteProfiles Protein kinase domain profile. 152 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0115 448 Pfam Protein tyrosine and serine/threonine kinase 165 417 IPR001245 GO:0004672|GO:0006468
Vvi19g0115 448 MobiDBLite consensus disorder prediction 47 86 - -
Vvi19g0115 448 SUPERFAMILY Protein kinase-like (PK-like) 164 417 IPR011009 -
Vvi19g0115 448 Gene3D Transferase(Phosphotransferase) domain 1 235 429 - -
Vvi19g0115 448 FunFam Inactive receptor-like serine/threonine-protein kinase 126 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0115 Vvi-Chr19 1346882 1349339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0115 12 419 Receptor kinase-like Gene Family AT1G75820 27.602 2.45e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vvi19g0115 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0115 - - vvi:100854079 837.025