Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0105 ATGCACCAAGTGTGTTGTCATGGACAATTTAGACGACTCAAGCGATCCTTTGCCAGAGATTCCAGCACGGTTGCCGCTGTTCGGGACGTCGTTGGAGCGAGTCGCAACTTACTTCGCAGATGTGCTTCAGGGACGCGAGGCCTCAACAAGTTCCTCACACCAACCAATGATAATCTGCTGACCCAGATCAAGGATGACTTTACTGAAGGGAAAGACTTGGTAGTGAGTGTGATATATGCAATGAGAGAGGAACCAATTTGTGCTCTTTGCATGCGGGCAGCTTGGGTCATGGCGGAGCTGGCTTTGATCGAGGGTGATTTCCAAGAGCTCTCGTTGCAACAATAG 345 0.5014 MHQVCCHGQFRRLKRSFARDSSTVAAVRDVVGASRNLLRRCASGTRGLNKFLTPTNDNLLTQIKDDFTEGKDLVVSVIYAMREEPICALCMRAAWVMAELALIEGDFQELSLQQ* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0105 114 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 56 88 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi19g0105 114 Gene3D - 52 91 IPR012340 -
Vvi19g0105 114 SUPERFAMILY Nucleic acid-binding proteins 53 90 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0105 Vvi-Chr19 1272343 1273425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0105 54 89 Eukaryotic Initiation Factors Gene Family AT1G69410 63.889 2.18e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0105 K03263 - cpap:110811212 58.9214