Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0097 ATGGCTATTGCAGGTGTGAAGAGGGCTATTCAGCTTCTAGTCCTCTTTCTAAGCCCTTTGATTCTAAATACCTATTTCAGCAACCACCCATCGGCGAATGTCCCTACTTCATGGCAAAATTTTTACCACAGTGATAGAGGAAGCTGGAAATTCAATGATAATACTCATGTGAGGCCCATCCTTGCACTCGATCTCAATGGCCAACCCAGTTTTGGTTTTGGATTTCTCAGAAATGGTACTACCAATGCATTCTATCTTGTTACTCTTAAAATTGCAATAAGACCCAATTCCTCATTCAGCGATTACGGTCCTCCCCCAGTTGTTCTTTGGTCTGCCAACCCGAATCGTCCAGTTGAAGAGAATGCCACTCTTGAACTGACTGTGAACGGAAAGTTGGTTTTAACAGATGTGGATGGTACTCCTGTATGGTCTGCCAACACCTCGGGTACCTTTGTTACTGGAATGAACTTATCACTTGGAGGAAACTTGAAGCTTGTTAATGGTAGCGGGTCTGTTGTCTGGCAGTCCTACCGTTTCCCAACCAACACATGGCTCCCTGAACAACGGCTACGTATTGGAAGGAACTTACATGCCAGTGTTTCCATGTCCAATTTGTCCAGTGGTATGTTCTACCTCTCAATAACTCGCGGTGGCATCAACGCCTATATCAAGTCCGTGCCTCCACAGCTTTACAAAACTCTCCTTCGTTTTCATGCTAATAATGCCACACCTCTTCGCTTTGGGATTGGATCTCTCACCCTCTCTAGCAACTATGTGACCTATAACCAGATTGAGAAAGGAGATTTTCAGTTCATGAGGATGGAGCCGGATGGGCATTTAAATGTTTATCAACTTATTGATGGTTATAAGGTAACGTTGTACTCTGATCTACTGAAAGATGAGCACTATGGCGACTGTGCTTATCCCACGGTGTGTGGTAACTATGGCGTTTGCTTTGAAGGACAGTGCAGCTGTGCTGGAGGTGGAAGTTCGATTTATTTTCGGCAGTTAAACGCTACCGCAGCCAGTTTTGGGTGCAGGGAAGTTACCCCTTTGTCTTGTCCAGATGCCCAGCTTCACACTTTTCTCGAGGTCATGAATGTTACTTGTTTCAACTTTGCCCCCCAGCTTTCCAATATAGATGCAGAGAGCTGCAGGAGGGAATGCTTGAAAAATTGTTCATGCAAGGCTGCAATGTTTCGCTACCAAGATAATACCTCAATTGGTACATGTTATTTACCTTCTCATATCTTTTCACTGATGGCCATAAGGAAAGAAGTATTCAATTATAATGCCTTGGCATTCATCAAGGTACAGAGATCAACACACAAGAAGAGCAAGTCATCTCTGGTTTCAGTATTGGTACCCTCTATTCTGGCTCCCTTACTGTGCTTTGCTTTTTTCATTAGCGTGTGCTACCGTTATGTAATGCAGAAAGGAAGAAAAAATATCGAAGGAAAACAGAGGGAGAACTCTGGAGATGAATCTTCTATTCATTTATTCAATGAGATGAAGAAGTTCTCTTTTGAAGATCTAAGCAATGCCACACAGGAGTTTGGGGTAAAGCTTGGTGGAGGCGGGTTCGGGGATGTGTTTGAAGGAATGTTGGGAGATGGGACGAGAGTTGCAGTGAAACGCCTAGGCTCCGATGTGGGTCAAGGAAGAAAAGAATTCTTGGCTGAGGTGAAGACGATAGGCAGCATTCACCATTTCAATCTCGGACCAGAGCGATGTGACAACCGTAGCAAAGGAACTCCAGGGTATATGGCTCCTGAGTTTATTCGAGGCAGAAATTTTTCAGCAAAGATAGATGTCTACAGCTTTGGAATTTTGATCTTGGAGATCATCGGAGGACGAAAAAATCGGGACTCCACTCAAGTTGACTACCTGATCGATATGGTGAAGGTGAAGGCAGAAGAGGGTCAACTGTCTGATCTAGTAGACGATCGAAATGAAGATATGCAGTGCCACAAAGAAGAAGCTGTGAAGTTGCAGAGGATTGGCATCTCCTGTTTACAGACTGATCACCATAAAAGGCCTTCAGTATCTCAGGTGATACATGTTTTGGAGGGTTCTATGGACGTTGAACCTATCACTGACTATAGCTTTTTGTCAATGTTTCCCATGGATTCTCCACTAGAAGCCAATCGAGCTGTCTCAGCCCCTCTCATTGCATCAGTCCTATCAGGACCAAGATGA 2199 0.442 MAIAGVKRAIQLLVLFLSPLILNTYFSNHPSANVPTSWQNFYHSDRGSWKFNDNTHVRPILALDLNGQPSFGFGFLRNGTTNAFYLVTLKIAIRPNSSFSDYGPPPVVLWSANPNRPVEENATLELTVNGKLVLTDVDGTPVWSANTSGTFVTGMNLSLGGNLKLVNGSGSVVWQSYRFPTNTWLPEQRLRIGRNLHASVSMSNLSSGMFYLSITRGGINAYIKSVPPQLYKTLLRFHANNATPLRFGIGSLTLSSNYVTYNQIEKGDFQFMRMEPDGHLNVYQLIDGYKVTLYSDLLKDEHYGDCAYPTVCGNYGVCFEGQCSCAGGGSSIYFRQLNATAASFGCREVTPLSCPDAQLHTFLEVMNVTCFNFAPQLSNIDAESCRRECLKNCSCKAAMFRYQDNTSIGTCYLPSHIFSLMAIRKEVFNYNALAFIKVQRSTHKKSKSSLVSVLVPSILAPLLCFAFFISVCYRYVMQKGRKNIEGKQRENSGDESSIHLFNEMKKFSFEDLSNATQEFGVKLGGGGFGDVFEGMLGDGTRVAVKRLGSDVGQGRKEFLAEVKTIGSIHHFNLGPERCDNRSKGTPGYMAPEFIRGRNFSAKIDVYSFGILILEIIGGRKNRDSTQVDYLIDMVKVKAEEGQLSDLVDDRNEDMQCHKEEAVKLQRIGISCLQTDHHKRPSVSQVIHVLEGSMDVEPITDYSFLSMFPMDSPLEANRAVSAPLIASVLSGPR* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0097 732 PIRSF SRK 53 574 IPR024171 GO:0004674
Vvi19g0097 732 PIRSF SRK 576 721 IPR024171 GO:0004674
Vvi19g0097 732 Gene3D Transferase(Phosphotransferase) domain 1 575 701 - -
Vvi19g0097 732 Pfam PAN-like domain 360 404 IPR003609 -
Vvi19g0097 732 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Vvi19g0097 732 Gene3D - 72 177 IPR036426 -
Vvi19g0097 732 SUPERFAMILY alpha-D-mannose-specific plant lectins 106 224 IPR036426 -
Vvi19g0097 732 ProSiteProfiles PAN/Apple domain profile. 354 439 IPR003609 -
Vvi19g0097 732 SUPERFAMILY Protein kinase-like (PK-like) 520 702 IPR011009 -
Vvi19g0097 732 CDD PAN_AP_plant 350 438 - -
Vvi19g0097 732 FunFam Os04g0303100 protein 103 231 - -
Vvi19g0097 732 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 66 573 - -
Vvi19g0097 732 Pfam D-mannose binding lectin 108 197 IPR001480 -
Vvi19g0097 732 ProSiteProfiles Bulb-type lectin domain profile. 48 178 IPR001480 -
Vvi19g0097 732 Pfam Protein kinase domain 581 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0097 732 Gene3D Phosphorylase Kinase; domain 1 489 574 - -
Vvi19g0097 732 SMART blect_4 61 180 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0097 Vvi-Chr19 1177272 1179757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0097 506 692 Receptor kinase-like Gene Family AT4G23280 30.833 1.15e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi19g0097 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0097 - - vvi:100245226 1153.66