Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0082 ATGGGCTGCTTCGCTTGTTGCATGTCTGATCCAAATGTTGGCAGTAAGTCATTGAAGAAGAGCATTAAGGAGTATGGTGACGCCAAAAGATTAGCCTCATTCGTTAACATCTCCTTCAAATCCGATGGCAGCAAGAGAAGATACATAGCAGAAGAGATAGCAAAAATGGGCAAAGGTAGTATTCCTGCCCATGTCTTCACAATAGGTGAGCTCTCAGCTGCAACCAACAACTTCAACCATGAGGCTTTGATCGGAGAAGGCGGCTTTGGGAGGGTGTACAAAGGCCATGTAGAGAAGACAAATAATAGTGTTGCTGTTAAGAGACTAGACAGGAATGGGTTCCAAGGCAACAGAGAGTTCCTTGTAGAGGTTTTCATGTTGAGTCTTCTTCACCATACTAATCTCGTGAACATGGTCGGATATTGCTGTGATGGTGATCAAAGGATTTTGGTTTATGAGTACATGGCCAATGGTTCCTTGGAGGATCACCTTCTCGATTTGGCTCCAAACAAGAAGCCTCTGGACTGGAAGACCAGGATGAAAATCGCTGAAGGAGCAGCGAGAGGGCTCGAATACTTGCATGACACAGCCAATCCCCCGGTCATTTACCGAGACTTCAAAGCATCCAACATACTATTGGATGAGGATTTCAATCCAAAGCTCTCCGATTTTGGCCTTGCCAAGCTCGGCCCGACCGGAGACAAGACTCATGTGTCCACAAGAGTGATGGGGACTTACGGCTACTGCGCGCCTGAGTATGCACTTACAGGCCAGTTGACGACAATGTCCGATGTATACAGCTTCGGCGTCGTGCTCTTGGAGATCATCACAGGAAGAAGAGTGATCGATAATTCTAGACCGACTGAGGAGCAAAATCTTGTCACTTGGGCACAACCATTGCTTAAAGACAGAAGGAAGTTTACTCTCATGGCCGACCCCCTCCTAGAAGGAAACTACCCCATAAAGGGTCTCTACCAAGCACTTGCAGTGGCAGCCATGTGTCTGCAAGAAGAAGCCACCATCAGGCCCTTGATGAGCGATGTGGTAATGGCCCTCGAGTACCTGTCTGACAAGAGGGCTGCAGGTGTTGATGGAGATGAAGAAGACGAGGATACCAACAAGAATGAAGATGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAAGGACACAACTTCATCTGATAGAAACAGAAGTGGAGGTATTGAGACTGATCATGATGAGGACAATGGTGAATCCAATGGAAAGACAACGAAAAAGGAGGAAGATATTCAGTGA 1287 0.4662 MGCFACCMSDPNVGSKSLKKSIKEYGDAKRLASFVNISFKSDGSKRRYIAEEIAKMGKGSIPAHVFTIGELSAATNNFNHEALIGEGGFGRVYKGHVEKTNNSVAVKRLDRNGFQGNREFLVEVFMLSLLHHTNLVNMVGYCCDGDQRILVYEYMANGSLEDHLLDLAPNKKPLDWKTRMKIAEGAARGLEYLHDTANPPVIYRDFKASNILLDEDFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTTMSDVYSFGVVLLEIITGRRVIDNSRPTEEQNLVTWAQPLLKDRRKFTLMADPLLEGNYPIKGLYQALAVAAMCLQEEATIRPLMSDVVMALEYLSDKRAAGVDGDEEDEDTNKNEDEGEEEEEEEEEEEIKDTTSSDRNRSGGIETDHDEDNGESNGKTTKKEEDIQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0082 428 PANTHER OS07G0668900 PROTEIN 21 361 - -
Vvi19g0082 428 Gene3D Phosphorylase Kinase; domain 1 39 154 - -
Vvi19g0082 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vvi19g0082 428 Coils Coil 374 394 - -
Vvi19g0082 428 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vvi19g0082 428 CDD STKc_IRAK 84 353 - -
Vvi19g0082 428 Pfam Protein kinase domain 79 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0082 428 Gene3D Transferase(Phosphotransferase) domain 1 155 382 - -
Vvi19g0082 428 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Vvi19g0082 428 MobiDBLite consensus disorder prediction 360 428 - -
Vvi19g0082 428 SUPERFAMILY Protein kinase-like (PK-like) 60 354 IPR011009 -
Vvi19g0082 428 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Vvi19g0082 428 MobiDBLite consensus disorder prediction 393 428 - -
Vvi19g0082 428 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0082 428 MobiDBLite consensus disorder prediction 366 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0082 Vvi-Chr19 974833 977755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0082 60 390 Glycoside Hydrolase AT3G07070 67.674 3.59e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi19g0082 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0082 - - vvi:100252025 803.512