Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0080 ATGGAGTACGTGGAAGCAGTGCTAACAAGCATTGGGCTATTGAAGGATATGTGGCCCTCCATTTCTAAGTGCTTCAACTATCACAAAATTCTTGATAAGAATTGCAGAACTCTCAAAGAGAAAATGGAGAGATTGAAGAGTCGTGAACAAGATGTCAAAATTGAATTACAAAATGCACAATATCAGCGAAAGAAAGAAAAAAAAGAAGTTGAAAATTGGTTGAAAGAAGTGCAAAATATGAAAGATGATCTGGAAAGGATGGAACAAGAAGTTGGAAAAGGAAGAATTTTCTCAAGATTGGGGTTTCTAAGGCAGTCTGAAGAGCATATAGAAAAAGTAGATGAGCTACTTGAACGCGGTAGATTTCCTGAAGGGATTTTGATTGATGTACTTCGAGATGAAGGAAGGGCATTGTTAACAACACAACTAATAGGTGAAACTACAACCAAAAGAAATTTAGAGAAGATCTGGACATGCTTAGAGAAAGGTGAAATCCAAAGCATTGGAGTTTGGGGAATGGGGGGGATCGGCAAAACAACTATTGTTACTCATATTCACAATCTCCTCTTGGAAAAAAAGGATACTTTCGGCCTTGTCTATTGGGTGACTGTATCAAAAGATTCAAGTGTTCGCAAGTTACAAGATGTCATTGCTGAGAAAATAAATTTAGATTTATCAAAAGAAGAAGATGAAAGGTTAAGATCTGCTTTATTATTTGAAGCATTGCAGAAAGAAAAGAAATTTGTGCTTATATTTGATGATGTGTGGGAGGTTTATCCACCACGGGAGGTTGGAATTCCAATTGGAGTTGATAGAGGAAAACTCATAATAACCACCAGATCAAGAGAAGTGTGCCTAAAAATGGGGTGCAAGGAAATCATCAAAGTGGAACCTCTTTATGAGGAAGAAGCGTGGGAGCTTTTCAACAAAACACTTGAGCGGTACAATGCACTTAGCCAAAAAGAAGAAAAAATAGCCAAGGACATTGTCAGGGAATGTGCAGGTTTACCTCTTGCCATCGTCACAACAGCTAGAAGTATGAGTGTTGCATATGACATTGCTGAATGGAGGAATGCATTGAATGAATTGAGGGAACATGTTAAAGGGCACACAATTAACATGGAAAATGATGTATTTAAAATATTGGAATTCAGCTACAATCGCTTGAATGATGAAAAACTTCAAGAATGTTTGTTGTACTGTGCATTGTTTCCCGAAGATTATAAGATTAGAAGGGTGTTGTTGATCAGATATTGGATTGCTGAGGGGCTTATAGAAGAAATGGGAAGTAGGCAAGCAGAGCGTGATAGAGGGCATGCTATACTGAATAAACTTGAAAATGTGTGTTTGTTGGAAAAATGTGAGAATGGAAAATGTGTAAAGATGCATGATGTGATCAGGGACATGGCTATCAATATAACAAGAAAGAATTCTCGATTCATGGTGAAAACTAGAAGAAATCTGGAAGATCTGCCAAACGAGATAGAGTGGTCAAATAATGTAGAAAGAGTTTCACTAATGGATAGCCATCTTTCAACTTTGATGTTTGTACCAAATTGCCCTAAGCTTTCCACATTGTTTCTTCAAAAACCCAAGTTTTCTTATCCACCTAAAGGTCTACATGAAGGTCTTCCAAATTCCTTCTTTGTGCACATGCTGAGCCTTAGAGTTCTGGACCTGTCATGCACAAACATTGCATTGCTACCAGATTCTATCTATGACATGGTGAATCTTCGAGCTCTAATTCTTTGTGAATGTCGAGAATTAAAGCAAGTAGGTTCATTAGCAAAGCTTAAGGAATTGAGAGAGTTGGATCTCAGTTGGAATGAAATGGAAACAATACCTAATGGGATAGAGGAATTGGTCCTCCTCAAACATTTCAGTTGGATCTCATACCATTCACGCCAGACAATACTTCCCAATCCTCTTTCCAAACTTCTTCCCAATCTTCTTCAACTACAGTGTCTAAGACATGATGGTGAGAAATTTCTGGATGTAGGAGTGGAGGAGTTGAGTGGGTTGAGAAAGTTGGAGGTCCTTGATGTCAATTTCTCCAGCCTACACAATTTCAATAGCTACATGAAGACACAACACTACCGGAGACTTACTCACTATCGTGTTCGATTAAGTGGAAGGGAATATTCTAGGCTTCTAGGGTCGCAAAGAAATCGACATGGTTTTTGTAAAGAAGTAGAAGTGTGGGAATGTAAGCTGACAGAAGGAGGGAAAGACAATGATGACTACCAACTTGTGCTCCCTACCAATGTCCAGTTTTTGCAGATATATACATGTAATGATCCCACTAGCCTATTGGATGTTTCTCCATCTCTCAAGATTGCCACCGATTTAAAAGCATGTTTGATATCAAAATGCGAGGGGATAAAATACTTGTGGTGGGTAGAGGACTGCATTGACTCATTAAACTCATTGTTTCTTGATTTATTGCCAAACTTAAGGGTTCTCTTCAAGTTGAAACCAACAGACAATGTACGTTGTTCCAGTCTCAAGCACTTGTACGTGAGTAAATGCCACAATCTAAAGCACTTGCTCACGCTTGAGTTAGTGAAGAACCACCTCCAAAACCTTCAAAACATCTATGTCCGTAGTTGCAGTCAAATGGAGGATATAATAGTAGGAGTAGAAGAAGAAGATATAAATGAAAAGAATAATCCCATTCTCTGTTTTCCCAACTTTCGATGTTTGGAGTTGGTTGATCTACCAAAACTAAAGGGCATATGGAAGGGAACAATGACTTGTGATTCCCTTCAACACCTTTTAGTATTGAAATGTCGAAATCTTAAAAGGCTCCCTTTTGCGGTTTCGGTGCACATAAACGATGGTAATGGCCAAAGAAGAGCTTCAACACCACCCCTCAAGCAAATCGGAGGAGACAAAGAATGGTGGGATGGGGTGGAATGGGACACACATCCTCATGCCAAATCTGTTTTTCAACCCCTATTTGTACAAGGAAAAGGTTTCAGAGTAAGTATAATTTTTTATTTTATGTATATGGATTTGATGAAGAATCTGTTTGATCAAGTACAAAGTCAAGATAATCTAACACTTTATTTTTATTTTTTTGGTTTCATGCAGTGGCTAAAAAACAATTGGGTCACAAGTCGTTGGAGAGAGACTGTGGACAATATATTTGAAGAAGTGTAA 3162 0.3827 MEYVEAVLTSIGLLKDMWPSISKCFNYHKILDKNCRTLKEKMERLKSREQDVKIELQNAQYQRKKEKKEVENWLKEVQNMKDDLERMEQEVGKGRIFSRLGFLRQSEEHIEKVDELLERGRFPEGILIDVLRDEGRALLTTQLIGETTTKRNLEKIWTCLEKGEIQSIGVWGMGGIGKTTIVTHIHNLLLEKKDTFGLVYWVTVSKDSSVRKLQDVIAEKINLDLSKEEDERLRSALLFEALQKEKKFVLIFDDVWEVYPPREVGIPIGVDRGKLIITTRSREVCLKMGCKEIIKVEPLYEEEAWELFNKTLERYNALSQKEEKIAKDIVRECAGLPLAIVTTARSMSVAYDIAEWRNALNELREHVKGHTINMENDVFKILEFSYNRLNDEKLQECLLYCALFPEDYKIRRVLLIRYWIAEGLIEEMGSRQAERDRGHAILNKLENVCLLEKCENGKCVKMHDVIRDMAINITRKNSRFMVKTRRNLEDLPNEIEWSNNVERVSLMDSHLSTLMFVPNCPKLSTLFLQKPKFSYPPKGLHEGLPNSFFVHMLSLRVLDLSCTNIALLPDSIYDMVNLRALILCECRELKQVGSLAKLKELRELDLSWNEMETIPNGIEELVLLKHFSWISYHSRQTILPNPLSKLLPNLLQLQCLRHDGEKFLDVGVEELSGLRKLEVLDVNFSSLHNFNSYMKTQHYRRLTHYRVRLSGREYSRLLGSQRNRHGFCKEVEVWECKLTEGGKDNDDYQLVLPTNVQFLQIYTCNDPTSLLDVSPSLKIATDLKACLISKCEGIKYLWWVEDCIDSLNSLFLDLLPNLRVLFKLKPTDNVRCSSLKHLYVSKCHNLKHLLTLELVKNHLQNLQNIYVRSCSQMEDIIVGVEEEDINEKNNPILCFPNFRCLELVDLPKLKGIWKGTMTCDSLQHLLVLKCRNLKRLPFAVSVHINDGNGQRRASTPPLKQIGGDKEWWDGVEWDTHPHAKSVFQPLFVQGKGFRVSIIFYFMYMDLMKNLFDQVQSQDNLTLYFYFFGFMQWLKNNWVTSRWRETVDNIFEEV* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0080 1053 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Vvi19g0080 1053 Gene3D - 135 296 IPR027417 -
Vvi19g0080 1053 Coils Coil 28 90 - -
Vvi19g0080 1053 Gene3D Ribonuclease Inhibitor 850 945 IPR032675 -
Vvi19g0080 1053 Gene3D - 299 385 IPR042197 -
Vvi19g0080 1053 FunFam Probable disease resistance protein At1g61300 136 292 - -
Vvi19g0080 1053 Gene3D Ribonuclease Inhibitor 468 741 IPR032675 -
Vvi19g0080 1053 SMART LRR_typ_2 598 621 IPR003591 -
Vvi19g0080 1053 SMART LRR_typ_2 552 575 IPR003591 -
Vvi19g0080 1053 FunFam Probable disease resistance protein At1g63360 386 472 - -
Vvi19g0080 1053 Coils Coil 353 373 - -
Vvi19g0080 1053 Pfam NB-ARC domain 151 387 IPR002182 GO:0043531
Vvi19g0080 1053 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 36 958 - -
Vvi19g0080 1053 Gene3D - 386 467 IPR036388 -
Vvi19g0080 1053 SUPERFAMILY L domain-like 461 939 - -
Vvi19g0080 1053 PRINTS Disease resistance protein signature 167 182 - -
Vvi19g0080 1053 PRINTS Disease resistance protein signature 242 256 - -
Vvi19g0080 1053 PRINTS Disease resistance protein signature 333 347 - -
Vvi19g0080 1053 PRINTS Disease resistance protein signature 550 566 - -
Vvi19g0080 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 401 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0080 Vvi-Chr19 957484 960645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0080 164 638 WRKY Transcription Factor Family AT5G45050 20.825 8.85e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0080 K13459 - vvi:100258875 2007.26