Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0077 ATGGAAGAGGAGGTGATCCACCACCTTCATCACCATCATCACAATCTCAATCATAATCATGTGGTTCATCAGTTCTTGTCGAAGCCTCTTCAAAACGGCGTCGTTCCTCCGGCGACCAGCGTTCATGAATTGCTTGAGTGCCCCGTGTGCACCAATTCCATGTACCCACCAATCCACCAGGGTTTGGAGGTGGAAACGGTGTCGCTTTGGGGGTGGTGGGTGGTCGGAATGACGTCGGGGACGAGGCTGCCGACATGGAAGGAGAGGGAGAACAACAATAGGAGAGAGCGGCGGAGAAGGGCCATCGCGGCGAAGATTTTTTCCAGACTGAGAATGTACGGAAACTACAAGCTCCCCAAGCATTGCGACAACAACGAAGTCCTCAAAGCCCTTTGCAACAAGGCCGGATGGACCGTCGAGCTCGACGGCACCACCTACCGGAAGGTGGCTAAAAAACAATTGGGGTCACAAGTCGTTGGAGTGAGACTATGGACAATATTTTTGAAGTGTAATTGA 516 0.5213 MEEEVIHHLHHHHHNLNHNHVVHQFLSKPLQNGVVPPATSVHELLECPVCTNSMYPPIHQGLEVETVSLWGWWVVGMTSGTRLPTWKERENNNRRERRRRAIAAKIFSRLRMYGNYKLPKHCDNNEVLKALCNKAGWTVELDGTTYRKVAKKQLGSQVVGVRLWTIFLKCN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0077 171 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 154 IPR008540 -
Vvi19g0077 171 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 77 153 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0077 Vvi-Chr19 918102 921663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0077 77 160 BZR Transcription Factor Family AT1G78700 76.190 3.25e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vvi19g0077 BES1_N 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0077 - - gmx:100814517 127.102