Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0072 ATGAGGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTACTATATCCCAGTTGAAAAACTTAATCGAGTTGGTGATGAGAAATTGCTCCATTACAGACTATTCCTTGTATATCAATTGTGGAGGAGAGGAAACAACTTTTAAAGGGAAGACATATGAAAAAGACAACAATGTTGAGGGTGCGTCACAGTTCTTTACTGATGGTATAGACAAATGGGCTTATAGCAGTACAGGGGCTTTCATAGGTAACCAGGGTGGTAGTCACCTAGCCAAAAACACATCTGCTTTGAACTCAGAGGATGCAGAGATGTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCCCTTATAAAGTGCGACTCCAATTTGCTGAAATCATGTTTTTTAGTAACCAGACATTTGGTAGCCTTGGGAGGCGCTTGTTCCACGTTTCAATTCAAGGGAATGTAGTTTTGAAGGATTTTAATATCATGGAAGAAGCTAAAGGTGCTGGTAAGGGCATTTATAGGGATTTTGATGCCTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGATGAAGGTGTATATGGGCCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAACCCGGGGCTGTCTGTTGGAGATATCATCGGCATTGTGATACCTTCATGTGTGGTCCTCGTATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTCTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAGCTCTCTTCTAAATCAAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGGTTCCGAAGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCTGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACACGGATAGCTGGAACGATAGGATACATGGCTCCTGAATATGCAATGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGAAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGATCAAACTATTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATCCACCAACCAGTCTCCCACTCTCAGGCCATCCATGTCCTCTGTGGTGAGTATGCTTGATGGCAAAATTGCAGTCCAAGCACCAACGATCAAGCATGATTCGATGAACCCAGATATGCGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTAGACAGTCAGGACCAAGGCAGCATATCAGTTGATGGGCCATGGGTTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGGATTTCCTTCATCGAGCAAGAGAACGCCCACATCAGCACAAAATAGCTGGAACAAGGCTCAACTTCTGCCAGAGGATGAAGTGCAAACTCTTGAGACAATAGCCACAAGATTGAATAACAGATACTGGAACATCAGCCAAACCTCTTGTGGAGGAGGTTTCAATGTGAATTTCACCTCCGACTATTTTAGCAACGTTACATGTGACTGTACTTTCGAGAACTCCACTGTTTGCCATGTCACAAACATCCAGCTGAAGGGTCTTAATTTAACTGGTATTATGCCTGATGAGTTTGGAAATCTTACTTACCTGCAAGAAATTGATCTCACCCGCAACTATCTCAATGGATCAATCCCTACAAGTCTTGCCCAGATTCCTCTTGTCACTCTGTCTGCTTTGGGAAACCGTCTCTCTGGGTCAATTCCTAAGGAAATTGGTGACATTGCTACACTTGAGGAGCTGGTCTTGGAAGATAATCAGCTAGAAGGATCCCTTCCTGAAAACCTTGGAAATTTGAGCAGTTTGAGTAGACTCCTTCTTACTGCAAACAATTTTACGGGAACAATACCAGAAACGTTTGGCAATCTGAAAAATTTAACTGATGTTCGGTTAGATGGGAATGCATTTTCAGGGAAGATACCAGATTTTATTGGGAATTGGACCCAACTTGACAGGCTAGATATGCAAGGCACATCCATGGACGGTCCCATTCCTTCTACCATATCCCTGTTGACAAACTTGACTCAGTTGAGAATAGCTGATTTGAATGGATCATCTATGGCTTTCCCCAACTTGCAGAATTTGACAAAGATGGAAGAACTGGTACTGAGAAATTGCTCAATTACCGACTCAATCCCAGACTACATTGGAAAAATGGCATCTTTGAAAACATTAGACCTGAGCTTCAACAGATTGAGTGGTCAAGTTTCAGATACATGGAGTTTGTCACAACTGGAATATCTGTTTCTGACTAACAACTCTTTGAGTGGAACACTACCCAGTTGGATATCAGACAGCAACCAGAAATTTGATGTATCTTACAACAACTTTACAGGGCCGTCGTCTCTCACAGTTTGCCAGCAAAGGGCCGTGAACTTAGTTTCCAGTTTTTCATCTTCAGACAGCAACTCAGTATTATGGTGTCTTAAGAAGGGTCTCCCCTGCCCTGGAAATGCCAAACACTATTCCTTGTTTATTAATTGTGGAGGATCTGAGATTAACTACGAGGGAAATGACTATGAAAGGGACTTAGATGGATCGGGTGCATCACACTTCAGTGATTATTCAGAAAAATGGGGTTATAGTAGCACAGGGGTTTTCACAAACAATGACGATGCTGCTTATGTAGCAACAAACACATTTTCTCTGAATATAACGGGTCCAGAGTACTTACAAACAGCTCGCACTTCTCCTATATCGCTCAAGTATTATGGTCTCTGCATGCGAAAGGGCAGCTACAGAGTGCAACTCCACTTTGCTGAAATTATGTTTTCTGATGATGAGACATTTAGCAGCTTGGGGAAGCGCATTTTTGATGTTTCTATCCAAGGGGTTACAGTCTTGAAGGATTTTAACATTGTGGAGGAAGCTAAAGGTGTTGGTAAAGCCATCACTAAGGATTTTGAGACTTCTGTTAATGGTAGCACTCTGGAGATCCATTTATACTGGGCAGGCAAAGGGACTAATGCCATTCCTAGTAGAGGTGTATATGGACCTCTTATATCCGCTATTACAGTGACACCAAACTTTGATGTCAGCACAGGGCTATCTGCTGGAGCTATTGCTGGTATTGTAATTGCTTCAATTGCGGCTGTTGTTTTGATTTTGATAGTCCTCAGACTGACAGGCTACCTAGGAGGGAAAGACCAAGAAGATAAAGAACTTCAAGCACTAAAGCTACAAACTGGTTATTTCAGTTTAAGACAGATCAAAGCTGCTACCAATAACTTTGATCCTGCAAATAAGATAGGTGAAGGTGGATTTGGGCCCGTTTACAAGGGTGTACTCCCAGATGGTTCAGTAATTGCGGTCAAGCAGCTCTCCTCCAAATCAAAACAAGGGAACCGTGAATTTGTCAATGAGATAGGCATGATATCTGCCTTGCAACACCCAAATCTAGTGAAGCTTTATGGCTGGTGTATTGAAGGAAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGGTCGCATTGAACAGCGGCTAAATTTGGACTGGCCAACAAGAAATAAAATATGCTTGGGGATAGCAAGGGGACTGGCATATCTACACGAGGAGTCAAGGTTGAAAATTGTTCACAGAGATATCAAGGCAACCAATGTGCTGCTTGATAAGGATCTAAATGCGAAGATATCTGACTTTGGTTTAGCTAAACTTGATGAAGAAGAGAACACACACATCAGCACACGTATCGCTGGAACAATAGGATACATGGCTCCTGAATATGCGATGAGGGGTTACTTGACAGACAAAGCAGATGTTTACAGCTTTGGAATCGTTGCTCTAGAGATTGTCAGTGGGAAAAGCAACACCAATTACAGGCCCAAGGAGGAGTTTGTCTATCTTCTTGACTGGGCTTATGTCCTACAAGAGCAAGAAAACCTTCTCGAACTCGTGGATCCAAGTCTTGGTTCGAAGTACTCCAAAGAAGAGGCACAAAGGATGCTGAACTTGGCTCTCCTGTGCGCCAACCCGTCTCCCACTCTCAGGCCATCCATGTCTTCTGTAGTGAGTATGCTCGAAGGCAAAACTGCAGTCCAAGTACCATTAATCAAGCGTAGCTCAATGAATTCAATGAATTTGGATATGAGGTTCAAAGCCTTCGAGAAGCTGTCACAGGACAGCCAAACATATGTCTCAGAGCGCTCTCAAGGCAGTCAAATGCAAAGGAGCATGTCAATGGATGGACCATGGTTTGGTTCCTCAGTTTCCTTCCCTGATAAAGACAAGACCCGAGAACATTCTTCATCAAGCAAACAGAAACTTCTCCATGACTAA 4917 0.4295 MRYLQGTSMDGPIPSTISQLKNLIELVMRNCSITDYSLYINCGGEETTFKGKTYEKDNNVEGASQFFTDGIDKWAYSSTGAFIGNQGGSHLAKNTSALNSEDAEMYQTARLAPISLKYYGLCLRKGPYKVRLQFAEIMFFSNQTFGSLGRRLFHVSIQGNVVLKDFNIMEEAKGAGKGIYRDFDASVDGSTLEIHLYWTGKGTNSIPDEGVYGPLISAIAVTPKFNPNPGLSVGDIIGIVIPSCVVLVLILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNCLARALFGSEEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMRMLNLALLSTNQSPTLRPSMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSHVSAFSVDSQDQGSISVDGPWVDSSISLHSREETRGFPSSSKRTPTSAQNSWNKAQLLPEDEVQTLETIATRLNNRYWNISQTSCGGGFNVNFTSDYFSNVTCDCTFENSTVCHVTNIQLKGLNLTGIMPDEFGNLTYLQEIDLTRNYLNGSIPTSLAQIPLVTLSALGNRLSGSIPKEIGDIATLEELVLEDNQLEGSLPENLGNLSSLSRLLLTANNFTGTIPETFGNLKNLTDVRLDGNAFSGKIPDFIGNWTQLDRLDMQGTSMDGPIPSTISLLTNLTQLRIADLNGSSMAFPNLQNLTKMEELVLRNCSITDSIPDYIGKMASLKTLDLSFNRLSGQVSDTWSLSQLEYLFLTNNSLSGTLPSWISDSNQKFDVSYNNFTGPSSLTVCQQRAVNLVSSFSSSDSNSVLWCLKKGLPCPGNAKHYSLFINCGGSEINYEGNDYERDLDGSGASHFSDYSEKWGYSSTGVFTNNDDAAYVATNTFSLNITGPEYLQTARTSPISLKYYGLCMRKGSYRVQLHFAEIMFSDDETFSSLGKRIFDVSIQGVTVLKDFNIVEEAKGVGKAITKDFETSVNGSTLEIHLYWAGKGTNAIPSRGVYGPLISAITVTPNFDVSTGLSAGAIAGIVIASIAAVVLILIVLRLTGYLGGKDQEDKELQALKLQTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLPDGSVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGWCIEGNQLLLIYEYLENNCLARALFGRIEQRLNLDWPTRNKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQENLLELVDPSLGSKYSKEEAQRMLNLALLCANPSPTLRPSMSSVVSMLEGKTAVQVPLIKRSSMNSMNLDMRFKAFEKLSQDSQTYVSERSQGSQMQRSMSMDGPWFGSSVSFPDKDKTREHSSSSKQKLLHD* 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0072 1638 CDD STKc_IRAK 298 565 - -
Vvi19g0072 1638 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 595 - -
Vvi19g0072 1638 Gene3D Phosphorylase Kinase; domain 1 1250 1357 - -
Vvi19g0072 1638 Gene3D Phosphorylase Kinase; domain 1 263 367 - -
Vvi19g0072 1638 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 261 367 - -
Vvi19g0072 1638 MobiDBLite consensus disorder prediction 627 648 - -
Vvi19g0072 1638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vvi19g0072 1638 MobiDBLite consensus disorder prediction 628 648 - -
Vvi19g0072 1638 SUPERFAMILY L domain-like 690 939 - -
Vvi19g0072 1638 ProSiteProfiles Protein kinase domain profile. 292 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0072 1638 Gene3D Ribonuclease Inhibitor 890 998 IPR032675 -
Vvi19g0072 1638 SUPERFAMILY Protein kinase-like (PK-like) 1267 1573 IPR011009 -
Vvi19g0072 1638 MobiDBLite consensus disorder prediction 1589 1638 - -
Vvi19g0072 1638 Pfam Malectin domain 1028 1209 IPR021720 -
Vvi19g0072 1638 Pfam Malectin domain 37 219 IPR021720 -
Vvi19g0072 1638 SMART serkin_6 1282 1553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0072 1638 SMART serkin_6 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0072 1638 Gene3D Transferase(Phosphotransferase) domain 1 368 577 - -
Vvi19g0072 1638 ProSiteProfiles Protein kinase domain profile. 1282 1564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0072 1638 CDD STKc_IRAK 1288 1555 - -
Vvi19g0072 1638 MobiDBLite consensus disorder prediction 1619 1638 - -
Vvi19g0072 1638 FunFam Putative LRR receptor-like serine/threonine-protein kinase 368 575 - -
Vvi19g0072 1638 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 656 888 - -
Vvi19g0072 1638 Pfam Protein tyrosine and serine/threonine kinase 295 512 IPR001245 GO:0004672|GO:0006468
Vvi19g0072 1638 Pfam Protein tyrosine and serine/threonine kinase 1286 1553 IPR001245 GO:0004672|GO:0006468
Vvi19g0072 1638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1404 1416 IPR008271 GO:0004672|GO:0006468
Vvi19g0072 1638 SUPERFAMILY Protein kinase-like (PK-like) 275 579 IPR011009 -
Vvi19g0072 1638 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1358 1565 - -
Vvi19g0072 1638 Gene3D Ribonuclease Inhibitor 656 889 IPR032675 -
Vvi19g0072 1638 Gene3D - 1024 1214 - -
Vvi19g0072 1638 Gene3D - 34 224 - -
Vvi19g0072 1638 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 1251 1357 - -
Vvi19g0072 1638 Pfam Leucine rich repeat 902 960 IPR001611 GO:0005515
Vvi19g0072 1638 Gene3D Transferase(Phosphotransferase) domain 1 1358 1570 - -
Vvi19g0072 1638 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 35 224 - -
Vvi19g0072 1638 MobiDBLite consensus disorder prediction 1589 1611 - -
Vvi19g0072 1638 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1026 1214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0072 Vvi-Chr19 831667 864165 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0072 37 629 Receptor kinase-like Gene Family AT1G53440 68.605 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0072 PK_Tyr_Ser-Thr 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0072 - - vvi:100260595 1902.87