LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0070	ATGCGCAGCCATGAACGGACCTTCGTGTGGTTGAACATTCAAAGCTTCTCCTCTTTAAAAACCTCCTTTAAACCCCTCTCTCCCACTCATTCAATTCGGTGTAAAGCGAACCAGCCATTGCTACAGAGCGAATCCATGGATTCTTCGTCTCTTCTCCTCTTGTTGTTGCTGGGTTTCTTTTGTTCTTCTGAGTTCACATCCCATGCTCAACTTATTCCAAAAGATGAAGTGCAAACTCTTAGAACAATATTCAAAAAGCTAAACTACAAATATTGGAACATAAGCCAAGCTTCATGCAATCGAGATTTCAACCGAACCATCGATGATAATAGCTACAGCAATGTCACATGCAACTGTACCTTCAATGAAGGAACTGTTTGCCATGTCACAAACATCCAGCTGAAGGGTCTTGATTTGGATGGAACTTTACCTGATGAGTTTGGAGATCTTCCTTATCTGCAAGAACTCAGTGATCTCTCCCGAAACTATATCAATGGATCGATCCCTACAAGTCTCAGTCGGCTTTCTCTTACCATTCTCGCTCTTGTTGGAAACAGAATCTCTGGGTCGATTCCTGAAGTAATCAGTAATATCAGTACACTTGAGGAGCTGGTCTTGGAAGCTAATCAGCTTGGAGAACATCTCCCTCCAAGTCTTGGAAAGTTGAGTCATTTAAGGAGACTTAGGATAGATGGGAATAATTTATCTGGGAAGATACCAGATTGGATTGGGAATTGGACCAACCTTGAGAAACTGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTACTATATCCCAGTTGAAAAACTTAATCGAATTGTTAATATCTGATTTGAGTGGACCGACTACATCTTTCCCCAATTTGAAGGATATGAAAAACTTAAAAATATTGGTGATGAGAAATTGCTCCATTACAGGTGAAATCCCAAAAGACATTGGATATATTGAGAGTTTAAAACTTTTAGACCTGAGCTTCAACAGACTGAATGGTAAAATTCCAGAGAGCTTTAAGGAAGAAAAAGAGGACAGAGCAAAACTTAATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAACTGGATAAGTTCGGACACTAAAAACAATATGAACTTGGTTTCAAGTTATGCATCTTCAGCAAGAGAGATGACCCCTTGGTTAAAGAAGGATCTCCCTTGCCCTCGAAAAGCCAAATACTATTCCTTGTATATCAATTGTGGAGGAGTGCAAACAACTTTTAAAAGGAAGGCATATGAAAAAGACGACAATGTTGAGGGTCCATCACAGTTCTTTACTGATAGTATAGACAAATGGGCTTATAGCAGTACAGGGGTTTTCATAGGTGATGAGGATGGTAGTCACCTAGCCAAAAACACATCTGCTTTGAACTCAGAGGATGCTGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCATTTATAGACTGCGACTCTACTTCGCTGAAATCATGTTTTCTAATGACCAGACATTTGGTAGCCTTGGGAAACGCTTGTTCGATGTTTCAATTCAAGGGAATGTAGTTTTGAGGGATTTTAATATCATGGAAGAAGCTGAAGGTGCTGGTAAGGGCATTTATAAGGATTTTGAGGCTTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCAAAAAAAGGCGTATATGGACCTCTCATATCTGCTATCGCAGTGACAAATTCTGATCCCAACTTGGGGCTGTCTATTGGAGGTATTATCGGCATTGTGATAACTTCATGTATGGTCCTTGTATTGATTTTGGTACTCCTGCGAATGAAAGGCTACCTAGGAGGGAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTCAGTTTACGACAGATCAAAGCTGCAACAAATAACTTTGACTCTGCGAGTAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAACTCTCTTCAAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCTTGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTGTCGAAGGAAACCAGTTGTTGCTCATTTACGAATATTTGGAAAACAATAGTCTTGCACGTGCACTTTTTGGTTCCGAAGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGTATCTAAATGCTAAGATATCCGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACGCGGATAGCTGGAACGATAGGATACATGGCTCCTGAATACGCAACGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAGTTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACGCCAATTATAGGCCAAAGCAAGAGTCTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGATCAAACTACTCAGAGGAGGAGGTGATGGGGATGCTGAACTTGGCCCTCTTATGCACCAACCAGTCCCCCACTCTCAGGCCATCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACGATCAAGCATGATTCGATGAACCCGGATATGAGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCTTGTCTCAGCATTCTCTGTAGACAGTCAGGTCCAAGGCAGCATATCAGTTGATGGGCCATGGGCTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGGGTTTCCTTCATCAAGCAGGGTTCTTACAGGACACCAAGATCTTTACAATACACATTTGGACTGA	3066	0.4247	MRSHERTFVWLNIQSFSSLKTSFKPLSPTHSIRCKANQPLLQSESMDSSSLLLLLLLGFFCSSEFTSHAQLIPKDEVQTLRTIFKKLNYKYWNISQASCNRDFNRTIDDNSYSNVTCNCTFNEGTVCHVTNIQLKGLDLDGTLPDEFGDLPYLQELSDLSRNYINGSIPTSLSRLSLTILALVGNRISGSIPEVISNISTLEELVLEANQLGEHLPPSLGKLSHLRRLRIDGNNLSGKIPDWIGNWTNLEKLYLQGTSMDGPIPSTISQLKNLIELLISDLSGPTTSFPNLKDMKNLKILVMRNCSITGEIPKDIGYIESLKLLDLSFNRLNGKIPESFKEEKEDRAKLNFMFLTNNSLTGEVPNWISSDTKNNMNLVSSYASSAREMTPWLKKDLPCPRKAKYYSLYINCGGVQTTFKRKAYEKDDNVEGPSQFFTDSIDKWAYSSTGVFIGDEDGSHLAKNTSALNSEDAEIYQTARLAPISLKYYGLCLRKGIYRLRLYFAEIMFSNDQTFGSLGKRLFDVSIQGNVVLRDFNIMEEAEGAGKGIYKDFEASVDGSTLEIHLYWTGKGTNSIPKKGVYGPLISAIAVTNSDPNLGLSIGGIIGIVITSCMVLVLILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSASKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGLISALQHPNLVKLYGCCVEGNQLLLIYEYLENNSLARALFGSEEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKYLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNANYRPKQESVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMGMLNLALLCTNQSPTLRPSMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSLVSAFSVDSQVQGSISVDGPWADSSISLHSREETRGFPSSSRVLTGHQDLYNTHLD*	1022

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0070	1021	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	629	735	-	-
	Vvi19g0070	1021	ProSiteProfiles	Protein kinase domain profile.	660	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g0070	1021	SMART	serkin_6	660	931	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g0070	1021	CDD	STKc_IRAK	666	933	-	-
	Vvi19g0070	1021	Gene3D	Ribonuclease Inhibitor	73	283	IPR032675	-
	Vvi19g0070	1021	SUPERFAMILY	Protein kinase-like (PK-like)	643	944	IPR011009	-
	Vvi19g0070	1021	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	782	794	IPR008271	GO:0004672\|GO:0006468
	Vvi19g0070	1021	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	736	943	-	-
	Vvi19g0070	1021	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	60	962	-	-
	Vvi19g0070	1021	Pfam	Malectin domain	406	588	IPR021720	-
	Vvi19g0070	1021	Gene3D	Ribonuclease Inhibitor	284	387	IPR032675	-
	Vvi19g0070	1021	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	76	234	-	-
	Vvi19g0070	1021	Gene3D	-	402	594	-	-
	Vvi19g0070	1021	Gene3D	Phosphorylase Kinase; domain 1	631	735	-	-
	Vvi19g0070	1021	Pfam	Leucine Rich Repeat	320	340	IPR001611	GO:0005515
	Vvi19g0070	1021	Pfam	Protein tyrosine and serine/threonine kinase	663	931	IPR001245	GO:0004672\|GO:0006468
	Vvi19g0070	1021	SUPERFAMILY	L domain-like	105	368	-	-
	Vvi19g0070	1021	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	404	593	-	-
	Vvi19g0070	1021	Gene3D	Transferase(Phosphotransferase) domain 1	736	945	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0070	Vvi-Chr19	813603	824118	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0070	54	997	Receptor kinase-like Gene Family	AT1G53440	59.123	0.0	1140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi19g0070		PK_Tyr_Ser-Thr	4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0070	-		-	vvi:100250347	1946.78