Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0068 ATGCTTGGCCAGCTGAAGGGTCTTGATTTGGATGGAACTTTACCTGATGAGTTTGGAAATCTTTCTTATCTGCAAGAACTTGATCTCTCCCGAAACTATATCAATGGATCGATCCCTACAAGTCTCGGTCGGCTTTCTCTTACCATTCTTGCTCTTGTTGGAAACAGAATCTCTGGGTCGATTCCTGAAGTAATCAGTAATATCAGTACACTTGAGGAGCTGGTCTTGGAAGCTAATCAGCTTGGAGAACATCTCCCTCCAAGTCTTGGAAAGTTGAGTCATTTAAGGAGACTTAGGATAGATGGGAATAATTTATCTGGGAAGATACCAGATTGGATTGGGAATTGGACCAAACTTGAGAAACTGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTATTATATCCCAGTTGAAAAACTTAACCGAGTTGTTAATATCTGATTTGAGTGGACCGATTACATCTTTCCCCAATTTGAAGGATATGAACAAATTAAAAACATTGGTGATGAGAAATTGCTCCATTACAGGTGAAATCCCAGAAGACATTGGAAATATTGAAAGTTTAAAACTTTTAGACCTGAGCTTCAACAGACTGAGTGGTACAATTCCAAAGAGCTTTAAGCAAGAAAAGAAGGTGAAAACAAAACTCGATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAGCTGGATAAGATCGGACACTGAAAACAAAATGACCCCTTGGTGCTTACAGAAGGATCTCCCTTGCTCTAGAAAAGCCAAATACTATTCCTTGTATATCAATTGTGGAGGAGAGGAAACAACTTTTAAAGGGAAGACATATGAAAAAGACAATAATGTTGAGGGTGCATCACAGTTCTTTACTGATAGTCTAGACAAATGGGCTTATAGCAGTACAGGGGTTTTCATAGGCAACCGGCATGGTAGTCACCTAGCTAAAAACGAATCTGCTTTGAACTCAAAGGATGCAGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCAAAAGGGCAATTATAAAGTGCGACTCTACTTTGCTGAAATCATGTTTTTTACTAACCAGACATTTGGTAGCCCTGGGAAGCGCTTGTTCGATGTTTCAATTCAAGGGAATGTAGTTTTGAAGGATTTTAATATCATGGAAGAAGCTAAAGGTGCTGGTAAGGGCATTTATAAGGATTTTGATGCCTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGATGAAGGTGTATATGGGCCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAACCCGGGGCTGTCTGTTGGAGGTATCATCGGCATTGTGATACCTTCATGTGTGGTCCTCATATTGATTTTGGTACTCTTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAAGTGCTGTTAAGCAGCTCTCTTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAACGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATCGAAGGAAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATAGTCTTGCACGTGCACTTTTTGGTAAATGCTTCACTACGATTTTGTATTCCATTTTATTATATTTCAACAATGAATATTATGACTTAAGCCTCTACCTCGACCACTTGTAG 1905 0.4037 MLGQLKGLDLDGTLPDEFGNLSYLQELDLSRNYINGSIPTSLGRLSLTILALVGNRISGSIPEVISNISTLEELVLEANQLGEHLPPSLGKLSHLRRLRIDGNNLSGKIPDWIGNWTKLEKLYLQGTSMDGPIPSIISQLKNLTELLISDLSGPITSFPNLKDMNKLKTLVMRNCSITGEIPEDIGNIESLKLLDLSFNRLSGTIPKSFKQEKKVKTKLDFMFLTNNSLTGEVPSWIRSDTENKMTPWCLQKDLPCSRKAKYYSLYINCGGEETTFKGKTYEKDNNVEGASQFFTDSLDKWAYSSTGVFIGNRHGSHLAKNESALNSKDAEIYQTARLAPISLKYYGLCLQKGNYKVRLYFAEIMFFTNQTFGSPGKRLFDVSIQGNVVLKDFNIMEEAKGAGKGIYKDFDASVDGSTLEIHLYWTGKGTNSIPDEGVYGPLISAIAVTPKFNPNPGLSVGGIIGIVIPSCVVLILILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVSAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGKCFTTILYSILLYFNNEYYDLSLYLDHL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0068 634 ProSiteProfiles Protein kinase domain profile. 519 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0068 634 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 3 85 - -
Vvi19g0068 634 Pfam Protein kinase domain 521 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0068 634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 607 - -
Vvi19g0068 634 Gene3D Ribonuclease Inhibitor 3 244 IPR032675 -
Vvi19g0068 634 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 488 594 - -
Vvi19g0068 634 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 86 152 - -
Vvi19g0068 634 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 262 451 - -
Vvi19g0068 634 Gene3D - 260 451 - -
Vvi19g0068 634 SUPERFAMILY Protein kinase-like (PK-like) 502 612 IPR011009 -
Vvi19g0068 634 Pfam Leucine Rich Repeat 190 210 IPR001611 GO:0005515
Vvi19g0068 634 Gene3D Phosphorylase Kinase; domain 1 490 594 - -
Vvi19g0068 634 Pfam Malectin domain 264 446 IPR021720 -
Vvi19g0068 634 SUPERFAMILY L domain-like 5 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0068 Vvi-Chr19 793823 799099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0068 4 606 Receptor kinase-like Gene Family AT1G53440 53.754 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0068 Malectin 4e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0068 - - vvi:100267526 1142.87