Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0064 ATGGAAAAAGCTGAAGGTGCCGGTAAAGGCATTTGTAGGGATTTTGATGCTTGTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGATGGGCAAAGGGACTAATTCCATTCCGGAAAAAGGTGTATATGGACCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAAGCCGGCGCTGTCTGTTGGAGGTATCATCGGCATTGTGATAGTTTCATGTGTGGTCCTCATATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAGCTCTCTTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGGTCGAGATGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCCGACTTTGGCTTGGCTAAGCTGGATGAAGATGAGAACACCCATATCAGCACACGGATAGCTGGAACGATAGGACACATGGCTCCTGAATATGCAATGAGGGGTTACTTGACGGACAAAGCTGATGTTTACAGCTTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACACCAATTACAGGCCAAAGGAAGAGCTTATGTCCTGCACGAGCAGGGAAATCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAACTTCTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATGCACCAACCAATCTCCCACTCTCAGGCCACCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACAATCAAGCATGATTCTATGAACCCGGATATGAGATTCAAAGCCTTCGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTAGACAGTCAGGTCCAAGGCAGCATATCACTTGATGGACCATGGATTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGACTTTTCTTCATCAAGCAAGCTTCTTACAGGACACCAAGATCTTTACAGTATACATTTGGACTGA 1431 0.4361 MEKAEGAGKGICRDFDACVDGSTLEIHLYWMGKGTNSIPEKGVYGPLISAIAVTPKFNPKPALSVGGIIGIVIVSCVVLILILVLLRMKGYLGGKDLEDRELRELGTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNCLARALFGRDEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGHMAPEYAMRGYLTDKADVYSFWNCCFRDCQREKQHQLQAKGRAYVLHEQGNLLELVDPSLGSNFSEEEVMRMLNLALLCTNQSPTLRPPMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSHVSAFSVDSQVQGSISLDGPWIDSSISLHSREETRDFSSSSKLLTGHQDLYSIHLD* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0064 476 Gene3D Transferase(Phosphotransferase) domain 1 198 400 - -
Vvi19g0064 476 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 93 197 - -
Vvi19g0064 476 CDD STKc_IRAK 128 388 - -
Vvi19g0064 476 SUPERFAMILY Protein kinase-like (PK-like) 107 399 IPR011009 -
Vvi19g0064 476 Gene3D Phosphorylase Kinase; domain 1 94 197 - -
Vvi19g0064 476 SMART serkin_6 122 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0064 476 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 417 - -
Vvi19g0064 476 Pfam Protein tyrosine and serine/threonine kinase 125 386 IPR001245 GO:0004672|GO:0006468
Vvi19g0064 476 ProSiteProfiles Protein kinase domain profile. 122 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0064 476 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 198 390 - -
Vvi19g0064 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0064 Vvi-Chr19 748996 751569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0064 2 452 Receptor kinase-like Gene Family AT1G53440 68.443 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0064 PK_Tyr_Ser-Thr 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0064 - - vvi:100246997 828.935