Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0061 ATGCATCTTCAGCAAGAGACATACTATTCCTTGTATATCAATTGTGGAGGAGACAAAATAACTTCAAAGAAAGGGAAGAAATATGAAAAAGACGATGGAATTGAGGGTGCATCACAGTTCTCTATTGATAGTACAAACAAATGGGCTTATAGCAGTACAGGGGCTTTCATAGGCAAAACGGATCATAGTTACCTAGCCAAAAACACATCTGCTTTGAAGTCAGAGGATGCAGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCCCTTATAAAGTGCGACTCCACTTTGCTGAAATCATGTTTTCTAATAACCAGACATTTGGTAGCCTTGGGAGGCGCTTGTTCGATGTTTCAATTCAAGGAACTGTAGTTTTAAGGGATTTTAATATCATGGAAGAAGCTGAAGGTGCCGGTAATGGCATTTATAGGGATTTTGATGCTTCTGTTAATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGAAAAAGGTGTATATGGACCTCTTATATCTGCTATTGCAGTGACACCAAATTTTGATCCCAACCCGGGGCTGTCTGTTGGAGGTATTATCGGCATTGTGATAGCTTCATGTGTGGTCCTCGTATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTCGAAGATAGAGAACTACGTGAGCTAGGAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGTGTACTGCCAGATGGTTCAGTAATTGCTATTAAGCAGCTCTCGTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTCGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGATCGCAATGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGAGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCTGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACACGGATAGCTGGAACCATAGGATACATGGCTCCTGAATATGCAATGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAATCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAACTACTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATGCACCAACCAATCTCCCACTCTCAGGCCACCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACAATCAAGCATGATACTATGAACCCGGATATGAGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTTGACAATCAGGTCCAAGGCAGCATATCACTTGATGGACCATGGATTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGACTTTTCTTCATCAAGCAAGCTTCTTACAGGACATCAAGATCTTTACAGTATACATTTGAACTGA 1878 0.4244 MHLQQETYYSLYINCGGDKITSKKGKKYEKDDGIEGASQFSIDSTNKWAYSSTGAFIGKTDHSYLAKNTSALKSEDAEIYQTARLAPISLKYYGLCLRKGPYKVRLHFAEIMFSNNQTFGSLGRRLFDVSIQGTVVLRDFNIMEEAEGAGNGIYRDFDASVNGSTLEIHLYWTGKGTNSIPEKGVYGPLISAIAVTPNFDPNPGLSVGGIIGIVIASCVVLVLILVLLRMKGYLGGKDLEDRELRELGTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLPDGSVIAIKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLSLIYEYLENNCLARALFDRNEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMRMLNLALLCTNQSPTLRPPMSSVVSMLDGKIAVQAPTIKHDTMNPDMRFKAFEKLSLDSQSHVSAFSVDNQVQGSISLDGPWIDSSISLHSREETRDFSSSSKLLTGHQDLYSIHLN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0061 625 Gene3D - 6 198 - -
Vvi19g0061 625 Pfam Protein tyrosine and serine/threonine kinase 267 535 IPR001245 GO:0004672|GO:0006468
Vvi19g0061 625 ProSiteProfiles Protein kinase domain profile. 264 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0061 625 SUPERFAMILY Protein kinase-like (PK-like) 249 548 IPR011009 -
Vvi19g0061 625 Pfam Malectin domain 10 193 IPR021720 -
Vvi19g0061 625 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 235 339 - -
Vvi19g0061 625 Gene3D Transferase(Phosphotransferase) domain 1 340 549 - -
Vvi19g0061 625 SMART serkin_6 264 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0061 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Vvi19g0061 625 Gene3D Phosphorylase Kinase; domain 1 236 339 - -
Vvi19g0061 625 CDD STKc_IRAK 270 537 - -
Vvi19g0061 625 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 41 566 - -
Vvi19g0061 625 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 8 198 - -
Vvi19g0061 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 340 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0061 Vvi-Chr19 722696 726103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0061 8 601 Receptor kinase-like Gene Family AT1G53440 68.647 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0061 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0061 - - vvi:100246997 1201.81