Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0059 ATGGAGAACTTGTCTCTTATTCTGTTGTTGTTTCTGGGTTTCTTTTGCTTTGTGGAGTTCACATCCCACGCGCAAGATATACCGGAAGATGAAGCTCTTAACACAATATCCTCCAAATTAAATATATCTGCAAAATTAAATAACAGCTATTGGAGTGTCAGCCAGTCTTCTTGCAGAGAGGGTCGAGATTTCAACGTAAACATCACATCAGAGATTCGAAGCCTTGTCACCTGCAACTGCACTTTCGTCAACTCCACTGTCTGCCATGTGACAAACATCCAGCTGAAGGGTCTTAATTTGACTGGAGTTTTACCTGCTGAATTTGGAAGTCTTAAGTATCTGCAAGAACTTGATCTCACCCGCAACTATTTCAATGGATCAATACCTACAAGTTTCTCTCGGCTTCCTCTTGTTAACCTGTCCCTTTTGGGGAACCGTCTATCTGGATCAATTCCTAAGGAAATTGGTGGTATTGCTACACTTGAGGAGCTGATCTTGGAAGATAATCAACTAGAAGGACCACTTAATGAAAACCTTGGAAATTTGGGCCGTTTGAGGAGACTCCTTCTCTCTGGAAACAATTTCACAGGAACGATACCGCAAAATTTTCGCAATCTGAAGAATTTAACTGATTTTAGGATAGATGGGAATAATTTATTCGGGAAAATACCTGATTTAATTGGGAACTGGACCAAACTTGACAAACTGTTTCTTCAAGGCACATCAATGGAGGGCCCCATTCCTTCGACTATATCCCAGTTGAAAAACTTAACTGAGTTGATGATATCTAATTTGAATGGAGCAAGCATGTCTTTTCCTGATTTGCAGGATATGAAGAATATGACAAGATTGGCACTGAGAGATTGCTTGATTACTGGTCAAATCCCTCCCTATCTTGGAGAAATGAAAAAATTAAAAATCTTAGATCTGAGCTTCAACCGACTGACCGGTCAAATTCCCGAAAGCCTACAGAGTTTGGACTCTATAGATTACATGTTTCTGAATGACAACTTGCTAAGTGGAGAAGTACCCAGAGGGATATTAAACTGGAAAGAAAACGTTGATTTATCTTACAACAATTTTACAGGATCACCTCCATCTACTTGCCAGCAAAACGATGTGAGCTTTGTTTCCAGTTATTCATCTTCAAAGAGTAGCACAGTACAATGGTGCTTAAAGAAGGACCTCCCGTGCCCTGAAAAACCCAGATATCATTCCTTTTTTATCAACTGTGGAGGAGGCAAGATGAGTTTTGAAGGGAATGAATATGACAAGGACGTAGATGGAAGGGGTGCATCACATTTTCTTGCTGATTATTTAGAAAGATGGGCTTACAGTAGTACAGGGGTTTTCAGCAAAGAAGACACTGCTTACCTCGCCAATAACACATCTCTGAAAATAATCGGCCCAGAATTCTACCAAACAGCTCGCGTTGCTCCTAACTCACTCAAGTATTATGGGCTTTGCCTACAAAAGGGCAGTTACAAAGTGCGGCTCCACTTTGCTGAAATCATGTTTACTAATGATCAGACCTTTAGTAGCTTGGGGAAGCGCATTTTTGATGTTTCAATTCAAGGGAATGTAGTTTTAAAGGATTTTAATATTATGGAAGAAGCGAAAGGTGCTGGTAAGGGCATTTATAAGGACTTTGATGATGTTCTCGTTAATGGTAGCACTCTGGAGATCCACTTATACTGGTCAGGCAAAGGGACCAAATCTATTCCAGTAAGAGGTGTTTATGGACCTCTTATATCCGCCATTGCAGTGACTCCAAACTTTGATCCCAACGCTGGGCTATCTGTTGGAGCTATCATCGGCATTGTAATGGCTTCATGTGTGGTCCTTGCGTTCATTTTGGCACTTCTATGGACGAAAGGTTACCTTGGAGGAAAAGACCTTGAAGATAAAGAACTCCGTGCTCTAGAGCTGCAAACCGGTTATTTCAGCTTACGACAGATCAAAGCTGCTACAAATAACTTTGACTCTGCAAATAAGATAGGTGAAGGCGGATTTGGGCCTGTTTACAAGGGTGTCCTGTCGGATGGTTCGATAATTGCTGTTAAGCAGCTCTCCTCTAAATCAAAACAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAGGCTTTATGGTTGTTGCATTGAAGGAAACCAGTTGCTGCTAATATATGAATATATGGAAAACAACAGCCTTGCCCGTGCGCTCTTTGGTCGTGAAGAACACCGTTTACATTTGGACTGGCCAACAAGAAAGAAGATTTGTTTGGGGATAGCAAGGGGACTCGCATATCTTCATGAGGAATCGAGATTGAAAATTGTTCATAGAGATATAAAGGCAACCAATGTGCTTCTTGATAAGGATCTAAGTGCTAAGATATCTGATTTTGGTTTGGCTAAGCTGGATGAAGAAGAGAACACCCACATCAGCACAAGAATAGCTGGAACAATAGGATATATGGCTCCTGAATATGCAATGAGGGGTTACTTGACTGACAAAGCAGACGTATACAGCTTTGGAGTTGTTGCCCTTGAGATTGTCAGTGGGAAAAGCAACACCAATTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTACATGAGCAGGGAAACATTCTGGAACTCGTAGACCCAATTCTCGGTTCTAACTACTCTGAAGAAGAGGCGGCAAAGATGCTGAACTTGTCTCTCTTATGCACCAACCCATCTCCCACTCTCAGGCCATCCATGTCTTCTGTAGTGAGCATGCTCGAAGGCAAAATTGCTGTCCAAGCACCAATAGTCAAGAAGAGCTCAATGAACCAGGACATGAGGTTCAAAGCCTTTGAGAAGTTGTCACAGGACAGCCAGTCTCATGTCTCAGCATTCTCCCAAGAAAGCCAGGTGCAAGGCAGCATATCAATGAACGGGCCGTGGATAGACTCCTCTGTTTCCCTTACCAGCAGAGAAGACACCCGTGACCATTCTTCATCAAGCAAGCTCCTTCCAGAACTCCCAGACCTCTACGACGTACATCTAGACTAA 3066 0.4214 MENLSLILLLFLGFFCFVEFTSHAQDIPEDEALNTISSKLNISAKLNNSYWSVSQSSCREGRDFNVNITSEIRSLVTCNCTFVNSTVCHVTNIQLKGLNLTGVLPAEFGSLKYLQELDLTRNYFNGSIPTSFSRLPLVNLSLLGNRLSGSIPKEIGGIATLEELILEDNQLEGPLNENLGNLGRLRRLLLSGNNFTGTIPQNFRNLKNLTDFRIDGNNLFGKIPDLIGNWTKLDKLFLQGTSMEGPIPSTISQLKNLTELMISNLNGASMSFPDLQDMKNMTRLALRDCLITGQIPPYLGEMKKLKILDLSFNRLTGQIPESLQSLDSIDYMFLNDNLLSGEVPRGILNWKENVDLSYNNFTGSPPSTCQQNDVSFVSSYSSSKSSTVQWCLKKDLPCPEKPRYHSFFINCGGGKMSFEGNEYDKDVDGRGASHFLADYLERWAYSSTGVFSKEDTAYLANNTSLKIIGPEFYQTARVAPNSLKYYGLCLQKGSYKVRLHFAEIMFTNDQTFSSLGKRIFDVSIQGNVVLKDFNIMEEAKGAGKGIYKDFDDVLVNGSTLEIHLYWSGKGTKSIPVRGVYGPLISAIAVTPNFDPNAGLSVGAIIGIVMASCVVLAFILALLWTKGYLGGKDLEDKELRALELQTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVRLYGCCIEGNQLLLIYEYMENNSLARALFGREEHRLHLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLSAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNILELVDPILGSNYSEEEAAKMLNLSLLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIVKKSSMNQDMRFKAFEKLSQDSQSHVSAFSQESQVQGSISMNGPWIDSSVSLTSREDTRDHSSSSKLLPELPDLYDVHLD* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0059 1021 SUPERFAMILY Protein kinase-like (PK-like) 644 947 IPR011009 -
Vvi19g0059 1021 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 266 - -
Vvi19g0059 1021 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Vvi19g0059 1021 Gene3D - 405 592 - -
Vvi19g0059 1021 SUPERFAMILY L domain-like 75 370 - -
Vvi19g0059 1021 CDD STKc_IRAK 666 933 - -
Vvi19g0059 1021 Pfam Malectin domain 407 587 IPR021720 -
Vvi19g0059 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vvi19g0059 1021 Gene3D Ribonuclease Inhibitor 166 268 IPR032675 -
Vvi19g0059 1021 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 592 - -
Vvi19g0059 1021 Gene3D Transferase(Phosphotransferase) domain 1 736 947 - -
Vvi19g0059 1021 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515
Vvi19g0059 1021 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 267 390 - -
Vvi19g0059 1021 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Vvi19g0059 1021 Gene3D Ribonuclease Inhibitor 29 161 IPR032675 -
Vvi19g0059 1021 Gene3D Phosphorylase Kinase; domain 1 630 735 - -
Vvi19g0059 1021 SMART serkin_6 660 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0059 1021 Pfam Protein tyrosine and serine/threonine kinase 663 930 IPR001245 GO:0004672|GO:0006468
Vvi19g0059 1021 Gene3D Ribonuclease Inhibitor 269 391 IPR032675 -
Vvi19g0059 1021 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 965 - -
Vvi19g0059 1021 ProSiteProfiles Protein kinase domain profile. 660 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0059 Vvi-Chr19 669185 677944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0059 9 997 Receptor kinase-like Gene Family AT1G53440 62.512 0.0 1258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0059 PK_Tyr_Ser-Thr 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0059 - - vvi:100243601 1954.87