Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0048 ATGACAAAATTGAAAACCCTAGATCTGAATTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTTGGTGTATCAAAGGCAGATTACATGAATTTTACCAGAAACATGCTAACTAGAGCCATGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATTCAATAACTTTACTAAGTTTTACTCCATGCGCATAAATTGTGGTGGAAAAGAAGTAATTGTTGATGGGAATACCAAATATGAAGATGATACAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACTGGTCACTTCATGGACAATGACCGTCCCACGGACTCCTTCATTGGGACAAACATGTCTAGATTCACCATGGAAAATTCTGGACTGTATACAACTGCACGCCTGTCTGCCCTGTCTCTCACTTTTTATGGATTTTGTCTGGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGAAGGCGTTTGTTTGATGTTTATGTTCAGCATGAGCTGGTTCTCAAGGATTTCAATATTGAGGATGAAGCAGGGGGTGTTGGTAAGGAAATCATAAAATTTTTTACTGCAGTTGTGACTAATAATGCCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAATTTATGGTCCTCTTATATCAGCTGTTTCTGTGGACCCTGATTTTTTACCTCCTTCCAGAAATGGCAGTAGTAGTATATCTGTGAGCATTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTATCTTCCTGGTTATCAGTATCCTTTGGTGGAGAGGCTGCCTAAGGCGCAAATATACATTGGAACAAGATTTAAAGGGTCTAGATCAGCAAACTGATTTGTTTACCCTAAGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTAACAACAAAATTGGAGAAGTTGGATTTGGTTCTGTTTACAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAACAACAGCCTCACTCATGCTTTGTTTGGCCCCAAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTGCTTGATAAGAATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACTAGGATTGCTGGTACATTGTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGAAACACTACTTATAGGCCAAAAGAGGAATGCATCCATCTTCTTGATTGGTTAATTTCGACAACATTCTTTCTTGCATATGTCGTCTCTTAA 1482 0.4015 MTKLKTLDLNFNKLTGEIPSSFVGVSKADYMNFTRNMLTRAMPDWMLKRGDNYDLSFNNFTKFYSMRINCGGKEVIVDGNTKYEDDTDSGGPSKFYQSRTNWAFSSTGHFMDNDRPTDSFIGTNMSRFTMENSGLYTTARLSALSLTFYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQHELVLKDFNIEDEAGGVGKEIIKFFTAVVTNNALEIRFYWAGKGTTGIPVRGIYGPLISAVSVDPDFLPPSRNGSSSISVSIVVGIVAGVILLIFLVISILWWRGCLRRKYTLEQDLKGLDQQTDLFTLRQIKAATNNFDANNKIGEVGFGSVYKLYGCCIEGNQLLLIYEYMENNSLTHALFGPKECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGTLFGIVALEIVSGRRNTTYRPKEECIHLLDWLISTTFFLAYVVS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0048 493 Gene3D - 66 252 - -
Vvi19g0048 493 SUPERFAMILY L domain-like 2 63 - -
Vvi19g0048 493 SUPERFAMILY Protein kinase-like (PK-like) 311 476 IPR011009 -
Vvi19g0048 493 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 63 254 - -
Vvi19g0048 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vvi19g0048 493 Gene3D Phosphorylase Kinase; domain 1 294 341 - -
Vvi19g0048 493 Pfam Malectin domain 65 249 IPR021720 -
Vvi19g0048 493 FunFam - 362 451 - -
Vvi19g0048 493 Pfam Protein tyrosine and serine/threonine kinase 340 466 IPR001245 GO:0004672|GO:0006468
Vvi19g0048 493 Gene3D Ribonuclease Inhibitor 1 65 IPR032675 -
Vvi19g0048 493 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 343 - -
Vvi19g0048 493 ProSiteProfiles Protein kinase domain profile. 268 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0048 493 Gene3D Transferase(Phosphotransferase) domain 1 342 473 - -
Vvi19g0048 493 SMART serkin_6 299 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0048 Vvi-Chr19 548335 556394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0048 1 480 Receptor kinase-like Gene Family AT1G07650 48.067 1.86e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0048 Malectin 1.1e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0048 - - vvi:100265805 816.224