Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0047 ATGAGTACAAACCTATATGAAAGTTTCTATATATATATATATATATATATATATATATACTCTCAAAAATCAATCTTATTATTATTACACTTTACAGTGGAAGCTCTGGAAGAGATCGCGAAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCATGCGGCGGCGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCATGTTGTTGGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTGAAGCTTCCTTACCTCCAAGAAATTGACTTCACCCGCAACTACCTCAACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATGGGAAACCGGTTGACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTAGAGTCCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCAGAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGCAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCATGGGAGTGGTTTCAGTGGGCCTATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAAACTTGAAAACACTGATATTGAGGAGTTGCAGTATTGTTGGCCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAAGGCAGATTACATATATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTAAATTTGTTTGGAAGCTCATCAGGAGGAAATAACTCTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATTGTTGATGGAAATACCACATATGAAGATGACAAAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCATCCTACGGACTCCTTTATTGGGACAAACGTGTCTAGACTCGCCATGGAAAATTCTGGACTGTATACAACCGCACGCCTCTCCGCCCTGTCTCTCACTTATTATGGATTCTGTCTAGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGAAGGCGTTTGTTTGATGTTTATGTTCAGGATGAGCTAGTTCTCAAGGATTTCAATATTGAGGATGAAGCAGGGGGTGTTAGCAAGGAAATCTTAAAATTTTTTACTGCAATTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTACGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACTGAAAATAGAAGCAGTAGCATATCTGTTGGCATTGTGGTTGGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTGTCTTCCTGGTTATAGGTATCCTTTGGTGGAGAGTCTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTTGATCTGCAGACTGGTTTGTTTACCTTAAGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGTGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAACAAGGAAACCGTGAGTTTGTGACTGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCTGAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTTCTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGTATAACACCCACATTAGCACGCGGATTGCTGGTACATTTGGATATATGGCACCTGAATATGCAATGCGGGGCTATTTAACCGACAAAGCAGATGTTTACAGTTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATCCATCTATCTTCTTGATCGGGCACTCTCTTTAAAAGAGAAGGGGAGCTTAATGGATATAGTTGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCATGGCAATGCTCAACATAGCTCTCCTGTGCACGACCATCTCTTCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCAGAACTGCTGTTCAGGACATCGTTTCTGATCCCAGTGCTCCTAGTGATGACTTAAAGCTCGAGGAGATGAAGGAGCATTATCGCCACATCCAAGAAAAGAGCATGGGCGTGAGCGAGAGCAAGGCTCAGAGCATGCCAGATGGGCCATGGACTGCTTCTTCATCCATCCCTGATCTCTACCCAGTCAACTTGGATTCTGAATATTGGGAGAAGAGAGATTAA 3036 0.4302 MSTNLYESFYIYIYIYIYIYSQKSILLLLHFTVEALEEIAKTLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVGIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLNGSIPPEWGTMQLVNISLMGNRLTGSIPKELGNISTLANLTVESNQLSGVLPQELGNLPSIERILLTSNNFTGELPETFAGLTTLKDFRVADNQFTGKIPNFIQNWTKLEKLVIHGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRNLKTLILRSCSIVGPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSKADYIYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVNLFGSSSGGNNSGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDKDSGGPSKFYQSRTNWAFSSTGHFMDDDHPTDSFIGTNVSRLAMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDELVLKDFNIEDEAGGVSKEILKFFTAIVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTENRSSSISVGIVVGVVVGIVAGVILLVFLVIGILWWRVCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVTEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEYNTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGRSNTTYRPKEESIYLLDRALSLKEKGSLMDIVDPRLGSDFNKEEVMAMLNIALLCTTISSAVRPAMSSVVSMLEGRTAVQDIVSDPSAPSDDLKLEEMKEHYRHIQEKSMGVSESKAQSMPDGPWTASSSIPDLYPVNLDSEYWEKRD* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0047 1011 Gene3D - 397 587 - -
Vvi19g0047 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Vvi19g0047 1011 Gene3D Transferase(Phosphotransferase) domain 1 741 950 - -
Vvi19g0047 1011 FunFam Leucine-rich repeat transmembrane protein kinase 198 400 - -
Vvi19g0047 1011 Pfam Malectin domain 399 583 IPR021720 -
Vvi19g0047 1011 SUPERFAMILY Protein kinase-like (PK-like) 649 947 IPR011009 -
Vvi19g0047 1011 ProSiteProfiles Protein kinase domain profile. 665 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0047 1011 Gene3D Ribonuclease Inhibitor 157 223 IPR032675 -
Vvi19g0047 1011 Gene3D Ribonuclease Inhibitor 30 156 IPR032675 -
Vvi19g0047 1011 Gene3D Phosphorylase Kinase; domain 1 630 740 - -
Vvi19g0047 1011 Gene3D Ribonuclease Inhibitor 224 371 IPR032675 -
Vvi19g0047 1011 MobiDBLite consensus disorder prediction 974 998 - -
Vvi19g0047 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 29 972 - -
Vvi19g0047 1011 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vvi19g0047 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 190 - -
Vvi19g0047 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 740 - -
Vvi19g0047 1011 SUPERFAMILY L domain-like 74 342 - -
Vvi19g0047 1011 CDD STKc_IRAK 671 938 - -
Vvi19g0047 1011 Pfam Protein tyrosine and serine/threonine kinase 668 877 IPR001245 GO:0004672|GO:0006468
Vvi19g0047 1011 MobiDBLite consensus disorder prediction 968 998 - -
Vvi19g0047 1011 Pfam Leucine rich repeat 275 335 IPR001611 GO:0005515
Vvi19g0047 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 397 588 - -
Vvi19g0047 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vvi19g0047 1011 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0047 Vvi-Chr19 535286 547165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0047 34 985 Receptor kinase-like Gene Family AT1G53420 56.667 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0047 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0047 - - vvi:100253721 1914.81