Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0046 ATGGGTTCATGGGTTCAGGGTGTTTTGTTCATTTTTGTTGTTGTTGTCTGTATTGGAAATGCGGTTGGGAGTGGGGAGAAGTGTGATTTTTTTCAAGGGATATGGGTTAGGGATGAGACATATCCTCTGTACAAGGCGGAGGAATGCCCATTCATAGAGAGGGAGTTCAATTGCCAGAGGAATGGGCGTATGGATGATTTGTATCTCAAGTTCAGATGGCAGCCCCAGGGCTATTTTATACCTCCTTCCAGAAATGGCAGTACTAGTATATCTGTGAGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTGTCTTCCTGGTTATCGGTATCCTTTGGTGGAGAGGCTGCCTAAGGCGCAAAGATACATTGGAACAAGATTTAAAGGGTCTAGATCAGCAAACTGGTTTGTTTACCTTAAGGCAAATTAAGGCTGCCACAAACAACTTGGATGCTGCCAACAAAATTGGAGAAGTTGGATTTGGTTCTGTTTACAAGGGCCTCTTATCGGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAGTCAAAACAAGGAAACCGTGAGTTTGTGAATGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATATGACCTCGCTCGTGCTTTGTTTGGCCCCGAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCATCCACCGAGACATCAAGGCCACAAATGTGCTGCTTGATAAGAATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACCGGGAATGCTGGTGCATTTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGAAACACTACTTATAGGCCAAAAGAGGAATGCATCTATCTTCTTGATTGGGCACTCTCATTAAAAGGGGAGGGGAATTTGATGGATCTAGTTGACCCCAGATTGGGCTCAAGACTTCAACAAGGAAGAGGTCATGGCAATGATCAACATAGCTCTCCTGTGCACAAAGGTCTCTCCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGA 1188 0.4411 MGSWVQGVLFIFVVVVCIGNAVGSGEKCDFFQGIWVRDETYPLYKAEECPFIEREFNCQRNGRMDDLYLKFRWQPQGYFIPPSRNGSTSISVSVVVGIVAGVILLVFLVIGILWWRGCLRRKDTLEQDLKGLDQQTGLFTLRQIKAATNNLDAANKIGEVGFGSVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYDLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIIHRDIKATNVLLDKNLNPKISDFGLAKLDEEDNTHISTGNAGAFFGIVALEIVSGRRNTTYRPKEECIYLLDWALSLKGEGNLMDLVDPRLGSRLQQGRGHGNDQHSSPVHKGLSSSQASYVISCEHA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0046 395 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 67 360 - -
Vvi19g0046 395 SMART serkin_6 151 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0046 395 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 120 226 - -
Vvi19g0046 395 SUPERFAMILY Protein kinase-like (PK-like) 136 357 IPR011009 -
Vvi19g0046 395 MobiDBLite consensus disorder prediction 361 382 - -
Vvi19g0046 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vvi19g0046 395 Gene3D Transferase(Phosphotransferase) domain 1 226 311 - -
Vvi19g0046 395 ProSiteProfiles Protein kinase domain profile. 151 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0046 395 FunFam Os07g0541700 protein 222 310 - -
Vvi19g0046 395 Gene3D Phosphorylase Kinase; domain 1 117 225 - -
Vvi19g0046 395 MobiDBLite consensus disorder prediction 365 382 - -
Vvi19g0046 395 Pfam PMR5 N terminal Domain 26 77 IPR025846 -
Vvi19g0046 395 Pfam Protein tyrosine and serine/threonine kinase 153 326 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0046 Vvi-Chr19 524806 528866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0046 81 364 Receptor kinase-like Gene Family AT1G53420 62.058 2.44e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0046 PK_Tyr_Ser-Thr 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0046 - - vvi:109121522 506.138