Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0045 ATGCCCTCCATTAACAGCCTTCTCTCTTCTTTACTCATTGCCTTCACTTTCTTCACAACTCTCACCTTCTCTGCAACTCTCCTCCCAAATAATGAAGGTGACACTACCATTCATTCTACCTCATTTTTCATAGTTCTATATATATACTCTCAAAAATCAATCTTATTATTATTACACTTTACAGTGGAAGCTCTGGAAGAGATCGCGGAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCGTGCGGCGGTGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCATGTTGTTAGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTTAAGCTTCCTTACCTCCAAGAAATTGACTTCACACGCAACTACCTCGACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATCGGAAACCGGTTAACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTAGAGTTCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCACAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGGAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCAAGGGAGTGGTTTCAGTGGGCCGATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAAACTTGAAAACTCTAATATTGAGGAGTTGCAATATTGTTGGCCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAATGCAGATTACATGTATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATCGTTGATGGAAATACCACATATGAAGATGACACAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCGTCCTACAGACTCCTTTATTGGGACAAATGTGTCTAGACTCACCATGGAAAATTCTGGACTGTATACAACCGCACGTCTCTCCGCCCTGTCTCTCACTTATTATGGATTCTGTCTGGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGAAGGCGTTTGTTTGATGTTTATGTTCAGGATGAGCTGGTTCTCAAGGATTTCGATATTGAGGATGATGCAGGGGGTGTTAGCAAGGAAATCATAAAATATTTTACTGCTGTTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTATGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACCAAAAATGGAAGCAGTAGTAAATCTGTTGGCATTGTGGTTGGCCATGTGGCTGGAGTCATTCTTCTTGTCTTCCTGGTTATAGGTATCCTTTGGTGGAGAGGCTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTAGATCTGCAGACTGGTTTGTTTACCTTAAGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGCGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAGCAAGGAAACCGTGAGTTTGTGAATGAGCTAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCTGAAGAATGTCAATTACAGTTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTTCTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACACGGATTGCTGGTACATTTGGATATATGGCACCTGAATATGCAATGCGGGGCTATTTAACTGACAAAGCAGATGTTTACAGTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATGCACCTATCTTCTTGATTGGGCACTCTCTTTAAAAGAGAAGGGGAACTTAATGGATCTAGTCGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCATGGCAATGCTCAACATAGCTCTCTTGTGCACGAACATCTCTTCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCATAACTGCTGTTCAGGACATTGTTTCTGATCCCAGTGCTCCTAGTGATGACTTAAAGCTCAAGGAGATGAAGGAGCATTATCGCCACATCCAAGAAAAGAGCATGGATGTGAGCGAGAGCAAGGCTCAGAGCATGCCAGACGGGCCATGGACTGCTTCTTCATCCATCACTGACCTCTACCCAGTCACCTTGGATTCTGAATATTGGGAGAAGAGAGATTAA 3075 0.4328 MPSINSLLSSLLIAFTFFTTLTFSATLLPNNEGDTTIHSTSFFIVLYIYSQKSILLLLHFTVEALEEIAETLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVSIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLDGSIPPEWGTMQLVNISLIGNRLTGSIPKELGNISTLANLTVEFNQLSGVLPQELGNLPSIERILLTSNNFTGELPQTFAGLTTLKDFRVGDNQFTGKIPNFIQNWTKLEKLVIQGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRNLKTLILRSCNIVGPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSNADYMYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDTDSGGPSKFYQSRTNWAFSSTGHFMDDDRPTDSFIGTNVSRLTMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDELVLKDFDIEDDAGGVSKEIIKYFTAVVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTKNGSSSKSVGIVVGHVAGVILLVFLVIGILWWRGCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVNELGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRPKEECTYLLDWALSLKEKGNLMDLVDPRLGSDFNKEEVMAMLNIALLCTNISSAVRPAMSSVVSMLEGITAVQDIVSDPSAPSDDLKLKEMKEHYRHIQEKSMDVSESKAQSMPDGPWTASSSITDLYPVTLDSEYWEKRD* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0045 1024 Gene3D Ribonuclease Inhibitor 231 417 IPR032675 -
Vvi19g0045 1024 FunFam Leucine-rich repeat transmembrane protein kinase 227 417 - -
Vvi19g0045 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 52 985 - -
Vvi19g0045 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 61 219 - -
Vvi19g0045 1024 MobiDBLite consensus disorder prediction 988 1002 - -
Vvi19g0045 1024 CDD STKc_IRAK 684 952 - -
Vvi19g0045 1024 Gene3D Phosphorylase Kinase; domain 1 645 753 - -
Vvi19g0045 1024 SMART serkin_6 678 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0045 1024 Pfam Leucine rich repeat 304 364 IPR001611 GO:0005515
Vvi19g0045 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 961 - -
Vvi19g0045 1024 SUPERFAMILY Protein kinase-like (PK-like) 662 963 IPR011009 -
Vvi19g0045 1024 Pfam Protein tyrosine and serine/threonine kinase 681 946 IPR001245 GO:0004672|GO:0006468
Vvi19g0045 1024 Gene3D Ribonuclease Inhibitor 62 228 IPR032675 -
Vvi19g0045 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Vvi19g0045 1024 Gene3D Transferase(Phosphotransferase) domain 1 754 966 - -
Vvi19g0045 1024 ProSiteProfiles Protein kinase domain profile. 678 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0045 1024 Gene3D - 418 604 - -
Vvi19g0045 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 605 - -
Vvi19g0045 1024 SUPERFAMILY L domain-like 102 371 - -
Vvi19g0045 1024 MobiDBLite consensus disorder prediction 982 1002 - -
Vvi19g0045 1024 Pfam Malectin domain 416 600 IPR021720 -
Vvi19g0045 1024 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Vvi19g0045 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 647 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0045 Vvi-Chr19 501504 518217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0045 63 998 Receptor kinase-like Gene Family AT1G53420 58.051 0.0 1100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0045 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0045 - - vvi:100265805 1922.13