Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0043 ATGGAGAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCCGAAGAATGTCAATTACAATTGGATTGGCCAACTAGGCACAGGATCTGTGTTGGCATAGCAAGAGTGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCATCCACCTAGACATCAAGGCCACAAATGTGCTGCTTGATAAGAATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACCCGGAATGCTGGTGCATTTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGAAACACTACTTATAGGCCAAAAGAGGAATGCATCTATCTTCTTGATTGGGCACTCTCATTAAAAGGGGAGGGGAATTTGATGGATCTAGTTGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCTTGGCGATGATCAACATAGCTCTCTTGAGCACAAAGGTCTCTCCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCAGAACCACTGTTCAGGACATTGTTTCTGATCCCAGTGTTCCTAGTGATGACTTAAAGCTCGAGGAGATGAAGGAGCATTATTACTACACCCAAGAAAAGATCATGGGTGTGAGCGAGAGCATGCCAGACAGGCCATGGACTGCTTCTTTATCCATCCCTGATCTCTACCCAGTCACCTTGGATTTTGAATATTGGGAGAACAGAGATTAA 741 0.448 MENNSLARALFGPEECQLQLDWPTRHRICVGIARVLAYLHEESRLKIIHLDIKATNVLLDKNLNPKISDFGLAKLDEEDNTHISTRNAGAFFGIVALEIVSGRRNTTYRPKEECIYLLDWALSLKGEGNLMDLVDPRLGSDFNKEEVLAMINIALLSTKVSPAVRPAMSSVVSMLEGRTTVQDIVSDPSVPSDDLKLEEMKEHYYYTQEKIMGVSESMPDRPWTASLSIPDLYPVTLDFEYWENRD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0043 246 FunFam Protein kinase superfamily protein 89 189 - -
Vvi19g0043 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vvi19g0043 246 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0043 246 Pfam Protein kinase domain 24 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0043 246 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Vvi19g0043 246 SUPERFAMILY Protein kinase-like (PK-like) 1 192 IPR011009 -
Vvi19g0043 246 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 206 - -
Vvi19g0043 246 Gene3D Transferase(Phosphotransferase) domain 1 92 189 - -
Vvi19g0043 246 FunFam - 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0043 Vvi-Chr19 494404 496540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0043 1 221 Receptor kinase-like Gene Family AT1G53420 55.870 3.03e-80 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0043 Pkinase 4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0043 - - vvi:100265805 402.519