Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0042 ATGCCCTCCATTAACAGCCTTCTCTCTTCTTTACTCATTGCCTTCGCTTTCTTCACAACTCTCACCTTCTCTGCAACTCTCCTCCCAAATAATGAAGTGGAAGCTCTGGAAGAGATCGCGAAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCGTGCGGCGGCGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCACGTTGTTAGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTGAAGCTTCCTTACCTCCAAGAAATTGACTTCACCCGCAACTACCTCAACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATCGGAAACCAATTAACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTGGAGTTCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCACAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGGAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCAAGGGAGTGGTTTCAGTGGGCCGATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAGACTTGAAAACACTGATATTGAGGAGTTGCAATATTGTTGACCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAATGCAGATTACATGTATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTAAATTTGTTTGGAAGCTCATCAGGAGGAAATAACTCTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATTGTTGATGGAAATACCACATATGAAGATGACACAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCGCCCTACGGACTCCTTTATTGGGACAAACGTGTCTAGACTCATCATGGAAAATTCTGGACTGTATACAACCGCACGCCTCTCTGCCCTGTCTCTCACTTATTATGGATTCTGTCTGGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGTAGGCGTTTGTTTGATGTTTATGTTCAGGATAAGTTGGTTCTCAAGGATTTCAATATTGAGGATGAAGCAGGAGGTGTTAGCAAGGAAATCTTAAAATATTTTACTGCAGTTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTATGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACCGAAAATGGAAGCAGTAGTATATCTGTTGGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTGTCTTCCTGCTTATAGGTATCCTTTGGTGGAGAGATTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTAGATCTGCAGACTGGCTTGTTTACCTTAAGGCAAATTAAGGCTGCAACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGCGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAACAAGGAAACCGTGAGTTTGTGAATGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCCGAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTACTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACTCGGATTGCTGGTACATATGGATATATGGCACCTGAATATGCAATGCGGGGCTATTTAACCGACAAAGCAGATGTTTACAGTTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATCCATCTATCTTCTTGATCGGGCACTCTCTTTAAAAGAGAAGGGGAGCTTAATGGATATAGTTGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCATGGCAATGCTCAACATAGCTCTCCTGTGCACGACCATCTCTTCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCAGAACTGCTGTTCAGGACATCGTTTCTGATCCCAGTGCTCCCAGTGATGACTTAAAGCTCGAGGAGATGAAGGAGCATTATCGCCACATCCAAGAAAAGAGCATGGGCGTGAGCGAGAGCAAGGCTCAGAGCATGCCAGATGGGCCATGGACTGCTTCTTCATCCATCCCTGATCTCTACCCAGTCAACTTGGATTCTGAATATTGGGAGAAGAGAGATTAA 3024 0.4382 MPSINSLLSSLLIAFAFFTTLTFSATLLPNNEVEALEEIAKTLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVSIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLNGSIPPEWGTMQLVNISLIGNQLTGSIPKELGNISTLANLTVEFNQLSGVLPQELGNLPSIERILLTSNNFTGELPQTFAGLTTLKDFRVGDNQFTGKIPNFIQNWTKLEKLVIQGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRDLKTLILRSCNIVDPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSNADYMYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVNLFGSSSGGNNSGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDTDSGGPSKFYQSRTNWAFSSTGHFMDDDRPTDSFIGTNVSRLIMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDKLVLKDFNIEDEAGGVSKEILKYFTAVVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTENGSSSISVGVVVGIVAGVILLVFLLIGILWWRDCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGRSNTTYRPKEESIYLLDRALSLKEKGSLMDIVDPRLGSDFNKEEVMAMLNIALLCTTISSAVRPAMSSVVSMLEGRTAVQDIVSDPSAPSDDLKLEEMKEHYRHIQEKSMGVSESKAQSMPDGPWTASSSIPDLYPVNLDSEYWEKRD* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0042 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Vvi19g0042 1007 Gene3D Phosphorylase Kinase; domain 1 627 736 - -
Vvi19g0042 1007 MobiDBLite consensus disorder prediction 963 994 - -
Vvi19g0042 1007 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Vvi19g0042 1007 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Vvi19g0042 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Vvi19g0042 1007 ProSiteProfiles Protein kinase domain profile. 661 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0042 1007 Pfam Malectin domain 399 583 IPR021720 -
Vvi19g0042 1007 Gene3D Ribonuclease Inhibitor 224 371 IPR032675 -
Vvi19g0042 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Vvi19g0042 1007 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0042 1007 MobiDBLite consensus disorder prediction 970 994 - -
Vvi19g0042 1007 Gene3D - 397 587 - -
Vvi19g0042 1007 Gene3D Ribonuclease Inhibitor 32 157 IPR032675 -
Vvi19g0042 1007 Gene3D Ribonuclease Inhibitor 158 223 IPR032675 -
Vvi19g0042 1007 Pfam Protein tyrosine and serine/threonine kinase 664 873 IPR001245 GO:0004672|GO:0006468
Vvi19g0042 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 190 - -
Vvi19g0042 1007 SUPERFAMILY L domain-like 73 342 - -
Vvi19g0042 1007 Gene3D Transferase(Phosphotransferase) domain 1 737 946 - -
Vvi19g0042 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 968 - -
Vvi19g0042 1007 CDD STKc_IRAK 667 934 - -
Vvi19g0042 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 397 588 - -
Vvi19g0042 1007 SUPERFAMILY Protein kinase-like (PK-like) 645 943 IPR011009 -
Vvi19g0042 1007 FunFam Leucine-rich repeat transmembrane protein kinase 198 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0042 Vvi-Chr19 479812 491484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0042 24 981 Receptor kinase-like Gene Family AT1G53420 56.729 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0042 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0042 - - vvi:100255520 1959.11