Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0036 ATGGCGATAACCTTTGCTTCATCATCGGTGATGCTCCCGTCTCCGTCTCCGTCTCCGAAACCCTCTTTTGGGTCTCTGAAGAAAACGACGCCGTTTCTTGGGTTCTCAATCTCCGCAGCAAACCCGAAGCCCTCCTTTCCTAGGCAGAGTTTTCGTGTGAATTGCCAGGACAAGGCAGCAGTTGTGCCCTTGGACCAGCGCTGGATGTTCGAACAGTCCGAAGTTTCTGGCCCTGACATTTGGAATAAAACATGGTATCCCAAAGCTGCTGATCATATAAACACAGAAAAAACATGGTATATTGTTGATGCAACTGATAAGATACTCGGAAGACTGGCATCAACAATAGCCATTTATATTCGTGGGAAGAATCTGGCAACCTACACTCCTAGTGTGGACATGGGATCATTTGTAATTGTGGTGAATGCAGAAAAAGTTGCAGTATCTGGCAAAAAGAGGACCCAGAAGCTCTACAGGAGGCATTCAGGAAGACCAGGTGGTATGAAAGTGGAGACATTTGATCAGTTACAACAGAGAATTCCAGAAAGAATTGTTGAACATGCTGTTCGGGGTATGCTTCCTAAAGGCAGGCTTGGCCGTGCACTTTTCAACCATCTTAAGGTATACAAGGGTCCACACCATCCACACGAGGCTCAGAAGCCCATTGACCTGCCCATCAGGGACAAAAGGATACAAAAGGAGAGGTAG 708 0.4689 MAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLPIRDKRIQKER* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0036 235 PANTHER RIBOSOMAL PROTEIN L13 85 232 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 CDD Ribosomal_L13 99 212 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 FunFam 50S ribosomal protein L13 82 226 - -
Vvi19g0036 235 Gene3D Ribosomal protein L13 88 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 MobiDBLite consensus disorder prediction 211 235 - -
Vvi19g0036 235 SUPERFAMILY Ribosomal protein L13 94 226 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 ProSitePatterns Ribosomal protein L13 signature. 189 211 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 Hamap 50S ribosomal protein L13 [rplM]. 99 223 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g0036 235 NCBIfam 50S ribosomal protein L13 93 224 IPR005823 GO:0003735|GO:0005840|GO:0006412
Vvi19g0036 235 Pfam Ribosomal protein L13 97 215 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0036 101 225 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 31.818 4.69e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0036 K02871 - vvi:100248623 456.447