LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0035	ATGGATCATGATGCTTGTCAAATCCTCTTGTTCCAAGAATTTGGTTTTAGGTGCAATTGCCTTGGTTGTTTTGCTGACGCTGCATGGTTGTCCTCCATTATAGATGAGTCTTGTTTGGTTTTTGAAAACTCTATGGAATATGATGGAGGTGACGGCATGGGATCAACGTCTTTAGCGGAGGAGAAATTTACCTGTGAGAAACCTTGTGGGCGGAAGAAGAACTGTGGAAGGCACTGTTGTAGTGAACGGTGTTGTCCTCTCTCTAATTCTGGCAACGTTCTCTCTGGTGATTGGGATCCGCACTTATGTTCAATGACATGTGGAAAGAAACTAAGGTGTGGACAACACTCTTGTGAAAATCTTTGTCATAGTGGCCATTGTCCTCCTTGCCTTGAAACAATCTTTATTGATTTAACATGTGCATGTGGGAGAACTTCAATCGCTCCTCCATTGCCTTGTGGTACCCCCACTCCATCATGTCAGCACCCATGCTCAATTCCTCAGCCATGTGGTCATTTATCTTCTCACAACTGCCACTTTGGAGACTGCCCACCTTATTCAATTCTTATAGCCAAGGAGTGCATTGGTGGACATGTGGTTCTCAAGAACATCCCTTGTGGGTCAATGGATATTAGATGTAACAAGCTTTGCAGCAAGACCAAACAATGTGGTATGCATGCTTGTAGGAGAACTTGTCACCCTTCTTGTGATTCTTCCTATGCATCTGGTTCTGGTTTGAAGTCTTCATGTGGCCAGACATGTGGTGCTTCGAGGAGAGATTGCAGGCATACATGCATTGCCCCTTGTCACCCTTCATCTCTTTGTCCTGATTCAAGATGTGATTTCCCTGTCACAATCACTTGTTCTTGTGGCCGAATAAGTGCAACTGTTCCTTGTGATGCTGGAGGCAGCAGTGTGGGGTTTAATGGTGATACAGTCTCTGAAGCCTCCATTATCCAAAAGTTGCTAGTACCACTTCAACCTGTGGATGCAAATGGCAAGAAAATTCCTATTGGACAGAGGAAGCTTGCCTATGATGATGAATGTGCAAAAACAGGAACGTAG	1065	0.4451	MDHDACQILLFQEFGFRCNCLGCFADAAWLSSIIDESCLVFENSMEYDGGDGMGSTSLAEEKFTCEKPCGRKKNCGRHCCSERCCPLSNSGNVLSGDWDPHLCSMTCGKKLRCGQHSCENLCHSGHCPPCLETIFIDLTCACGRTSIAPPLPCGTPTPSCQHPCSIPQPCGHLSSHNCHFGDCPPYSILIAKECIGGHVVLKNIPCGSMDIRCNKLCSKTKQCGMHACRRTCHPSCDSSYASGSGLKSSCGQTCGASRRDCRHTCIAPCHPSSLCPDSRCDFPVTITCSCGRISATVPCDAGGSSVGFNGDTVSEASIIQKLLVPLQPVDANGKKIPIGQRKLAYDDECAKTGT*	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0035	354	PANTHER	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	59	351	IPR034078	GO:0003700
	Vvi19g0035	354	SMART	znfxneu3	113	132	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	SMART	znfxneu3	223	252	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	SMART	znfxneu3	170	185	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	SMART	znfxneu3	261	282	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	CDD	NF-X1-zinc-finger	103	155	-	-
	Vvi19g0035	354	Pfam	NF-X1 type zinc finger	113	130	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	Pfam	NF-X1 type zinc finger	177	185	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	Pfam	NF-X1 type zinc finger	223	234	IPR000967	GO:0005634\|GO:0008270
	Vvi19g0035	354	Pfam	NF-X1 type zinc finger	254	271	IPR000967	GO:0005634\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0035	Vvi-Chr19	381851	383685	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-X1	Vvi19g0035		zf-NF-X1	8.2	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0035	K12236		-	vvi:100268010	599.742