Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0031 ATGAAGATTCAGTGCAACGTGTGCGAGGCGGCGGAGGCCAACGTGCTGTGCTGCGCCGACGAAGCGGCGCTCTGCTGGGCCTGCGACGAGAAGGTTCACGCGGCGAACAAGCTCGCGAGCAAGCACCAGAGGGTTCCTCTCTCCACCTCGTCTTCTCAGATGCCCAAGTGCGACATCTGCCAGGAGACAGTTGGCTATTTCTTCTGCCTAGAAGACAGAGCTTTACTCTGCAGGAAATGTGATGTTTCCATACACACGGCGAATACATATGTTTCAGCTCACCAGAGGTTTCTGCTGACTGGAGTGAAAGTAGGGCTTGAACCTACACAACCCGGTTCATCCTCTTCCATGGGGAAATCAAATCTTGTTGGGAAGCACTCAGAAACTGAATCTCCTTCTGCGTCCAGGAGAGGTGCCCCTATGCCATTGACCTGTGATTACAACAAAACGTTATCCATCCAAGCTGGTGGAGCTGGGGATTTTGTGCCAACTAAGGTTTCATTTGCTGGGGGTTCTGGATCAACTGAAAGCATTCCACAGTGGCATATAGATGAACTTTTTGGACTAAATGAATTCAATCAGACCTATGACTGCATGGATAATGGAACATCCAAGGCTGATATTGGTAAGCTCGGTGACTCTGATTGCTCACCAACTTTAAGAGCTGCTGATGAAGAGCTGAACTTCGATGATTGCTTAGGTCAGGTGCCAGAGACAACTTGGATGGTGCCTCAGATCTCGTCACCACCTACAGCCTCAGGACTATACTGGCCTAAAAGTTCTCAAATTTCATCCGATACTTCTGTTTTTGTGCCTGACATATGCTATTCACCTGTGCAAATGCAAAATGAATCTGCCACCAAATGTCGGAGGCAATTCTGA 882 0.4887 MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSTSSSQMPKCDICQETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGLEPTQPGSSSSMGKSNLVGKHSETESPSASRRGAPMPLTCDYNKTLSIQAGGAGDFVPTKVSFAGGSGSTESIPQWHIDELFGLNEFNQTYDCMDNGTSKADIGKLGDSDCSPTLRAADEELNFDDCLGQVPETTWMVPQISSPPTASGLYWPKSSQISSDTSVFVPDICYSPVQMQNESATKCRRQF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0031 293 FunFam B-box zinc finger protein 22 1 93 - -
Vvi19g0031 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vvi19g0031 293 CDD Bbox1_BBX-like 5 47 - -
Vvi19g0031 293 Gene3D Classic Zinc Finger 1 93 - -
Vvi19g0031 293 MobiDBLite consensus disorder prediction 109 129 - -
Vvi19g0031 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi19g0031 293 MobiDBLite consensus disorder prediction 109 139 - -
Vvi19g0031 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vvi19g0031 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi19g0031 293 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Vvi19g0031 293 CDD Bbox1_BBX-like 56 99 - -
Vvi19g0031 293 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Vvi19g0031 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0031 Vvi-Chr19 357072 371413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0031 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 52.147 5.86e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi19g0031 zf-B_box 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0031 - - vvi:100260711 611.298