Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0027 ATGGGTCGAAAGATTGAAATGAGGAAGATAGAGAATACTACTAGACGTCAAATCACATTCTCTAAGCGCAAAAGTAGTCTGATAAGAAAGGCCAATGAAATCTCAATCTTATGTGATGTAGATGTCGCCTTGCTTACCTATTCACCATCTGGTCGTCTTAATAAGTTTTGCAATAGAGATAGGATGGAGGATGTGATAAAAAGTTACATCAATCTAAGTCCTGCAAAAAGATATTAG 237 0.3629 MGRKIEMRKIENTTRRQITFSKRKSSLIRKANEISILCDVDVALLTYSPSGRLNKFCNRDRMEDVIKSYINLSPAKRY* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0027 78 Gene3D - 12 78 IPR036879 GO:0003677|GO:0046983
Vvi19g0027 78 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vvi19g0027 78 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vvi19g0027 78 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vvi19g0027 78 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vvi19g0027 78 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 69 - -
Vvi19g0027 78 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vvi19g0027 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 56 IPR002100 GO:0003677|GO:0046983
Vvi19g0027 78 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0027 Vvi-Chr19 329777 330095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0027 1 77 Type I MADS-box Gene Family AT1G77980 60.256 1.27e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi19g0027 SRF-TF 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0027 - - vvi:109121815 155.992