Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0026 ATGCCCGGGAACAAGTACAACGGTATTTCCAGCGTCCCCACCAGCAGAGTAGAGAGGCTCTTGAGGGACAGAGAGTTAAGGAAGAGCAGCAGGGCATCTCATCCAAATGAGGCAAATGATACAAACAGGGGAACAGAGGTTTTGGAACATGAAGGTGATAACTTGGGGTCTTCCCATGTGGAACAGCATTCAGAAACAGCTGCAATCCGAGGAGTGCTTAGTGAGGAATGTGAAAAACAAGAGACCAGGCCTGCCAGACAGAGACTTCTGGTGGTGGCTAACAGGCTGCCGGTGTCTGCAATTAGGAGAGGTGAGGAATCATGGTCCCTAGAGATAAGTGCCGGGGGTCTAGTCAGTGCTCTTCTGGGTGTAAAGGAGTTTGAAGCAAGATGGATTGGATGGGCAGGTGTAAATGTGCCTGATGAGGCTGGACAGAGGGCACTTACCAAAGCTTTAGCTGAAAAGATGTGTATCCCAGTATTTCTTGATGAAGATATTGTTCATCAATATTATAATGGCTACTGCAACAACATTTTGTGGCCTCTTTTCCATTACCTTGGACTTCCGCAAGAAGATCGACTTGCCACCACTAGAAGCTTTCAGTCTCAGTTTGCCGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTAAATAAACATTATGAAGAAGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGCCTGAAGAAATATAACAGTGAAATGAAAGTTGGCTGGTTTCTCCACACACCATTTCCTTCTTCTGAAATCCACAGGACACTTCCGTCTCGATCTGAGCTGCTGCATTCGGTTCTTGCAGCTGATTTAGTTGGTTTCCATACTTACGATTATGCAAGGCATTTCGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAGACTGACTCGTGTGGCTGCTTTTCCTATTGGCATAGATTCGCATAGATTCATTCGAGCACTTGATGCTCCACAAGTTCAGGATCGCATTAATGAATTAAAGCGAACATTTACAGGGCGAAAGGTGATGTTAGGCGTCGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAGATACTGGCATTTGAAAAGTTTCTTGAGGAAAACTCAGAGTGGCAACAGAAAGTAGTTTTGCTGCAAATTGCCGTGCCTACAAGAACAGACGTTCCCGAGTATCAAAAACTTACAAGTCAGGTTCATGAAATTGTTGGACGCATTAATGGCAGATTTGGAACCTTGACAGCTGTTCCAATACATCACCTGGATCGTTCTCTTGACTTTTATGCATTATGTGCACTATATGCTGTTACAGATGTGGCACTCGTAACATCTTTGAGGGACGGAATGAATCTGGTCAGCTATGAGTTTGTGGCTTGCCAAGAATCTAAGAAAGGGGTTCTCATCCTTAGTGAATTTGCTGGTGCAGCCCAATCCTTGGGTGCCGGAGCAATCCTAGTGAACCCTTGGAACATCACAGAAGTTGCTTCTTCAATTGCTCAGGCTTTGAATATGCCACCTGAAGAAAGAGAAAAACGGCATGAGCATAACTTTGAGCATGTGAAAAACCACACTGCTCAAGAATGGGCTGAAACTTTTGTAAGTGAGTTGAATGATACAGTTGTTGAGGCAGATCTTAGGAAAAGGAAGGTCCCGCCAAGACTTACACCTGAAAATGCAATTAAATGTTATCTGCAGTCCAATAATCGATTACTCATATTGGGATTCAATGTAACATTAACTGAACCAGTGGATACTCCTGGGAGTAGAGGGGGGGATCAAATTAAAGAAATGGATCTTAAACTGCACCCAGAGTTGAAGGGGCCCTTGACAGCACTCGGCAATGATCCAAAGACAACCATCGTTGTTCTTAGCGGAAGTGACAGAACTGTCTTGGATGATAACTTCGGGGAGTTTGACATGTGGTTAGCAGCAGAAAATGGGATGTTTTTACGTCACACAAAAGGAGAATGGATGACAACAATGCCTGAGCATTTAAACATGGAGTGGGTTGACAGTGTAAAGCATGTTTTTGAGTATTTCACTGAAAGAACGCCTCGATCACAACTTCAAAAACGTGAAACTTCACTTGTATGGAATTACAAGTATGCAGATGCTGAATTTGGAAAGCTTCAAGCTAGGGATATGTTGCAGCATCTCTGGACAGGTCCAATTTCAAATGCATCTGTTGACGTTGTCCAGGGTAGTCGCTCTGTGGAAGTGCGTGCAGTTGGTGTTACAAAGGGTGCAGCCATTGATCGTATATTAGGAGAGATAGTTCACAATAAATCCATGACCTCACCAATTGACTATGTTTTATGCGCTGGCCATTTTCTGGGGAAGGATGAAGATGTGTACACATTTTTTGAGCCAGAGCTGCCTTCTGATAACATAAGCATGGCAAAAAGCAGAGCGATCGATGCATTTAAGTTATCTGGTGAGAGGAAATCTTCTTTGAAGCTTCCAGCTAACAAGAGTGGGTCAAAGTCATCTCATGGTAAGACACAGCGGCCTTTGCCAAACCCAGATAAGAAAACCCCAGACCATAGCAGTGGGAGTGGGAGTGGGAGGCGGCCATCACCAGAGAAGACATCATGGAATGTGCTTGATCTCAAGGGGGAGAACTACTTCTCTTGTGCAGTAGGGCGAACTCGTACCAAGGCTCGCTTCACCTTTGGATCATCAGACGAAGTCGTCTCATTTCTAAAGGAACTGGCTGGAGCCAAGTCTTCTTTTTAA 2784 0.4422 MPGNKYNGISSVPTSRVERLLRDRELRKSSRASHPNEANDTNRGTEVLEHEGDNLGSSHVEQHSETAAIRGVLSEECEKQETRPARQRLLVVANRLPVSAIRRGEESWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEAGQRALTKALAEKMCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNSEMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSHRFIRALDAPQVQDRINELKRTFTGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSEWQQKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQESKKGVLILSEFAGAAQSLGAGAILVNPWNITEVASSIAQALNMPPEEREKRHEHNFEHVKNHTAQEWAETFVSELNDTVVEADLRKRKVPPRLTPENAIKCYLQSNNRLLILGFNVTLTEPVDTPGSRGGDQIKEMDLKLHPELKGPLTALGNDPKTTIVVLSGSDRTVLDDNFGEFDMWLAAENGMFLRHTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSQLQKRETSLVWNYKYADAEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKSMTSPIDYVLCAGHFLGKDEDVYTFFEPELPSDNISMAKSRAIDAFKLSGERKSSLKLPANKSGSKSSHGKTQRPLPNPDKKTPDHSSGSGSGRRPSPEKTSWNVLDLKGENYFSCAVGRTRTKARFTFGSSDEVVSFLKELAGAKSSF* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0026 927 Gene3D Glycogen Phosphorylase B; 79 334 - -
Vvi19g0026 927 SUPERFAMILY HAD-like 613 921 IPR036412 -
Vvi19g0026 927 Pfam Trehalose-phosphatase 611 816 IPR003337 GO:0003824|GO:0005992
Vvi19g0026 927 MobiDBLite consensus disorder prediction 834 882 - -
Vvi19g0026 927 FunFam Alpha,alpha-trehalose-phosphate synthase 613 684 - -
Vvi19g0026 927 CDD GT20_TPS 88 553 IPR001830 GO:0003824|GO:0005992
Vvi19g0026 927 MobiDBLite consensus disorder prediction 861 877 - -
Vvi19g0026 927 MobiDBLite consensus disorder prediction 834 852 - -
Vvi19g0026 927 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 80 334 - -
Vvi19g0026 927 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 335 537 - -
Vvi19g0026 927 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 76 921 IPR001830 GO:0003824|GO:0005992
Vvi19g0026 927 Pfam Glycosyltransferase family 20 88 553 IPR001830 GO:0003824|GO:0005992
Vvi19g0026 927 CDD HAD_TPP 586 807 - -
Vvi19g0026 927 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 88 553 IPR012766 GO:0003825|GO:0005992
Vvi19g0026 927 Gene3D Glycogen Phosphorylase B; 335 538 - -
Vvi19g0026 927 MobiDBLite consensus disorder prediction 1 50 - -
Vvi19g0026 927 MobiDBLite consensus disorder prediction 17 34 - -
Vvi19g0026 927 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 87 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0026 Vvi-Chr19 292428 305637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0026 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.931 0.0 1501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0026 K16055 - vvi:100265802 1859.73