Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0020 ATGATGGATTCCAAATTCCATGCCTTACCCCCTCTCAAGAGGTTGAGGCTCTTGCAACAGAAGGAGAAGGAGAAAGAGAAAGAGAAAGAGCAAGTGCAAGAGCATCACCTTGATGGCCCAATTACCTCCACCTGCCTACCGGCAAAGAAGCGCAAAGAATCCCGAGAACCCGCCATCGCGGCTGCTTCTGTGGGGGTATGTCGCTTGCCTGCCAAGAAGAGGGTGTGGGCTGTCCAGCCTGATTTCAGCCCAATCAAATCTGTTTCTCATTTTGACCTCAATGTTGAGTACAATCCATGCTTTGAGGGGGAGAGGGAAGATAAAGCGGAATTGGAAGAAGAAGAGCAAAAGGAAAAGGAAAATGGAGCGTCCGTCGTGAATGGTAGTGGCCAAACATTTGTTGAAACCGGCAGAGAAGAAGGTGAAGAAGAGGAAGAAGACGATGGGATTGAATGTGCTGTGTGTCAGAGCACCGACGGAGACCCTTCGGATCCAATTGTCTTCTGTGATGGGTGTGATCTGATGGTTCACGCCACCTGCTATGGCAATCCCCTCGTGAAGGGTGTTCCTGAAGGTGACTGGTTCTGCAACCAATGCTTGGGTTCTCATTCTTCTCAAAACAAGAAGAATCCTAAGGCCTTCTCTTGCTGCCTCTGCCCAAACACTGGTGGAGCCATGAAGCCCACCGAGGATGGGCGGTGGGCTCACATAGTGTGCGCTCTTCTTGTTCCGGAGGTCTTCTTCAAGGACCCGGAAGGCCGAGATGGTGTAGATCGCTCTAAGGTTCCATTGAGAAGGTGGAAAGAGAAGTGCTATGTGTGCAAAAGTTCAAATGGGTGTGCCATCGATTGCTCTGAGCCCAAATGCCCTTTGGCATTCCATGTGACTTGTGGGCTGAGGGAGGAGCTCTGTATTGAGTACAGAGAAGGCAGGAACAAGGGTGGCATTGTTGCTGGGTTCTGCATGAATCACACTCAATTATGGAAGAAGCAACAGCAGACAGGGAAGTTCAAGATTGTGGCCAGGGATGATGACAAGAGGCAATGA 1047 0.5033 MMDSKFHALPPLKRLRLLQQKEKEKEKEKEQVQEHHLDGPITSTCLPAKKRKESREPAIAAASVGVCRLPAKKRVWAVQPDFSPIKSVSHFDLNVEYNPCFEGEREDKAELEEEEQKEKENGASVVNGSGQTFVETGREEGEEEEEDDGIECAVCQSTDGDPSDPIVFCDGCDLMVHATCYGNPLVKGVPEGDWFCNQCLGSHSSQNKKNPKAFSCCLCPNTGGAMKPTEDGRWAHIVCALLVPEVFFKDPEGRDGVDRSKVPLRRWKEKCYVCKSSNGCAIDCSEPKCPLAFHVTCGLREELCIEYREGRNKGGIVAGFCMNHTQLWKKQQQTGKFKIVARDDDKRQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0020 348 MobiDBLite consensus disorder prediction 105 121 - -
Vvi19g0020 348 Coils Coil 101 121 - -
Vvi19g0020 348 PANTHER PHD FINGER PROTEINS 56 325 - -
Vvi19g0020 348 MobiDBLite consensus disorder prediction 20 55 - -
Vvi19g0020 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 327 IPR013083 -
Vvi19g0020 348 ProSiteProfiles Extended PHD (ePHD) domain profile. 213 325 IPR034732 -
Vvi19g0020 348 MobiDBLite consensus disorder prediction 105 148 - -
Vvi19g0020 348 Pfam PHD-zinc-finger like domain 215 311 - -
Vvi19g0020 348 CDD PHD_BRPF_JADE_like 152 199 - -
Vvi19g0020 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 212 IPR013083 -
Vvi19g0020 348 ProSiteProfiles Zinc finger PHD-type profile. 149 202 IPR019787 -
Vvi19g0020 348 SMART PHD_3 270 325 IPR001965 -
Vvi19g0020 348 SMART PHD_3 151 200 IPR001965 -
Vvi19g0020 348 Coils Coil 15 38 - -
Vvi19g0020 348 MobiDBLite consensus disorder prediction 20 36 - -
Vvi19g0020 348 SUPERFAMILY FYVE/PHD zinc finger 142 220 IPR011011 -
Vvi19g0020 348 Pfam PHD-finger 152 200 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0020 Vvi-Chr19 241617 242774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0020 26 347 C2H2 Transcription Factor Family AT3G14740 55.325 2.66e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi19g0020 zf-HC5HC2H_2 1.9e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0020 K11380 - vvi:100252016 653.669