Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0013 ATGGCTGCCTCCACAATGGCTCTCTCCTCCCCCTCCCTAGCCGGCAAGGCCCTCAAGCTTGCCCCCTCTGCCTCCGATCTCCTAGGAGAAGGGCGGGTGACTATGCGGAAGACTGGCGGCCGGGCCAAGCCTGTCTCCTCCGGGAGCCCCTGGTATGGCACCGACCGGGTCAAGTACTTGGGCCCGTTCTCGGGTGAGCCGCCGTCCTACCTGACTGGTGAATTCCCCGGGGACTACGGGTGGGACACCGCCGGGCTCTCGGCCGACCCCGAGACTTTTGCGAAGAACAGGGAGCTTGAGGTCATCCACTGCCGATGGGCCATGCTGGGCGCCCTCGGCTGCGTGTTCCCGGAGCTTCTGGCGCGCAATGGCGTGAAATTTGGCGAAGCCGTGTGGTTCAAGGCCGGGGCGCAGATCTTCAGCGAGGGGGGACTTGATTATCTGGGCAATCCTAACCTGGTTCATGCGCAGAGCATTTTGGCCATATGGGCATCTCAGGTGATACTGATGGGTGCAGTAGAGGGGTACAGAATTGGCGGTGGACCGCTAGGAGAAGTGGTGGACCCGCTGTATCCGGGAGGCAGCTTTGATCCATTGGGGTTGGCAGATGACCCCGAGGCCTTTGCGGAGCTGAAGGTGAAGGAGATAAAGAATGGGAGGTTGGCTATGTTCTCCATGTTCGGGTTCTTTGTGCAGGCCATAGTGACTGGGAAGGGGCCATTGGAGAACCTGGCTGATCACTTGGCTGACCCTGTTAACAACAATGCTTGGGCTTATGCCACCAACTTTGTCCCTGGAAAGTGA 804 0.5995 MAASTMALSSPSLAGKALKLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0013 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Vvi19g0013 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Vvi19g0013 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Vvi19g0013 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 267 IPR001344 GO:0009765|GO:0016020
Vvi19g0013 267 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0013 Vvi-Chr19 150637 151440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0013 1 267 Chloroplast and Mitochondria Gene Families AT1G29930 87.687 1.24e-172 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0013 K08912 - vvi:100245214 548.51