Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0011 ATGGCTGAAAATGTATCAGAAGACGCCCACGACTATTCTTTACTCAAGGATCTCAGATTGCAAATCGGTGTTGAAGATTCATCTTTCTCCCTCTGCTTTTGGGTTTACCTCATGAACTCCACTCCATTTCCTGCTACAATAATCGGACAGGTGCATTCAGACATCACAGGCAGTGCCCCTTTTCTTGTTTTAAATGAAAAGAAAAAAATGATGCTTTTACCATTGCTTTATCTACACAGAGAAGCTCTCTATCCTGGAAATTCCACTTCATGGACTGAAGTTCCCTCTGCATCTGCAGAGGTTGACTTTCCCCTCAAGAGATGGGTTCATGTGGGATGTGAGGTTGCTACAGATTTTATGCGGCTTCACATTGATGGCAAGATTGTGGGAGAGAAGCTTCTATCTTCCTTGTCTAACAATGAATCTGATTCAAATGGTTCAGGGAGAGTAACTTTGGTTGGTATTGGTGGAGATGATGCTGTACAGGGTTATATCCATAATGCAAAAATCTTGCCTTTAACATTTTCTATCAAGGATCACTATGTTCAGGACCCGCCTTTACAACTATCTATTGATAGTTCAACTGCCTTAGATATTGAAGAGGACAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGCCGCAGGAATTTTTCCTTGGATGTTATTTTATTAGATGCCTTGGGCCAGCCTGTGAACAAGGAAATAGAGGTTGATGCTTCACTCTTGTATGCTGATAATGGGGAACCGGTTGAGAAGCCAAATGATTCAGAAGCTCCTCTTCTAACGAGCTATGATGGGATTGAATTTTCTTCTTCTGATAGACCAAGTAAACTATCAAATGGACGTGCATCCTTTAAGCTCAAGATATCTCAGCTCTCTTCCAAGTGTGATAATAGATTGTTCCACATTAAGTTTTCCATACCAAAAATTGGAACATATCCTTTCCTAGAGACCATCTCCCATTCAATTCATTGTATCTCACGGAATCGTAATACCCGGTCCTCCTCTCTGATGTGTAAAAGATCTTCCTCTGTTGTCCATCCTCTCAGTGGATCTCAGTCATCTGGGCTGGATGACCTATCATCTGATATTCAGCACAGTAATTTACGTGAATTAAAGCCAAGTCCATCATTAAAGAGGATCAAATCAGGACAAGAAAAATCATCTGCAACATTTATGGTTGATCCAACCATGGACCAACCTGATGAGGAATGCAACTCACATGCCTGGACTTCTAATCAGGTCAATAATGTGTGTCAGACACATTTGGAGGGCAGACCAGAAAATGTTGAAGAAACAGAAAATTCTTCATCTCATTCGGAGAGCACTGAAGAAGGAAACCCATTTTTCAACAATATGTCAAGTTATAAAAATCAAATTTCAGATTTAACCATTTTCAAGTATTGCTTGGGAGGCAATGCTGATAGGTGTCTTCTGCTCAAAGAGATTGCATCCTTTGCTTCTGAACAAGAGTTGGAAGACTTTGCACAGATGGTTGCTCTATACTCGGGATGTTCCCACCACCGGTGCCAAATAATAATCACAAGGAAATTGATAGAGGAGGGAACAAAAGCTTGGAATTTGATCTCTCAAAACAATCACCAGGTGCATTGGGAGAATGTGGTTTTTGAAATTGAAGAATTATTCATGAAGATTGCTCACTGCAGTACTAGATCTCTAACACATGAGGACTTAGAGCTTTTGAGGAGAATTTCTGGATGCCAGGAGTACCTTGACCGGGAAAATTTTGATAAAATGTGGTATTGGCTATATCCTGTTGCTTTTACATTATCAAGAGATTGGATAAATGCAACTTGGTGTTCTGCCTCACCAAAGTGGATAGAAGGGTTTGTTACAAAAGAAGAAGCAGAGTCTTCACTTCAAGGTCCAAGGGGCCTTCAACAACCTGGGACATTTATACTGCGGTTTCCGACTTCAAGGAGCTGGCCCCACCCAGACGCTGGTAGCTTAATTGTGACATACATTGGCAGTGATTACAATCTTCATCACAGGATGCTTTCCCTTGATAATATTTACAGTTCTGATGAAACGGTGAGAAACATGAAACCTCTAGAAGATATGCTACTGGCAGAGCCCGAGCTCTCTCGACTTGGAAGGATAATAAGAAATCACTGA 2145 0.4103 MAENVSEDAHDYSLLKDLRLQIGVEDSSFSLCFWVYLMNSTPFPATIIGQVHSDITGSAPFLVLNEKKKMMLLPLLYLHREALYPGNSTSWTEVPSASAEVDFPLKRWVHVGCEVATDFMRLHIDGKIVGEKLLSSLSNNESDSNGSGRVTLVGIGGDDAVQGYIHNAKILPLTFSIKDHYVQDPPLQLSIDSSTALDIEEDSDGVWSIVGGKASCRRNFSLDVILLDALGQPVNKEIEVDASLLYADNGEPVEKPNDSEAPLLTSYDGIEFSSSDRPSKLSNGRASFKLKISQLSSKCDNRLFHIKFSIPKIGTYPFLETISHSIHCISRNRNTRSSSLMCKRSSSVVHPLSGSQSSGLDDLSSDIQHSNLRELKPSPSLKRIKSGQEKSSATFMVDPTMDQPDEECNSHAWTSNQVNNVCQTHLEGRPENVEETENSSSHSESTEEGNPFFNNMSSYKNQISDLTIFKYCLGGNADRCLLLKEIASFASEQELEDFAQMVALYSGCSHHRCQIIITRKLIEEGTKAWNLISQNNHQVHWENVVFEIEELFMKIAHCSTRSLTHEDLELLRRISGCQEYLDRENFDKMWYWLYPVAFTLSRDWINATWCSASPKWIEGFVTKEEAESSLQGPRGLQQPGTFILRFPTSRSWPHPDAGSLIVTYIGSDYNLHHRMLSLDNIYSSDETVRNMKPLEDMLLAEPELSRLGRIIRNH* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0011 714 ProSiteProfiles Src homology 2 (SH2) domain profile. 616 714 IPR000980 -
Vvi19g0011 714 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 170 IPR013320 -
Vvi19g0011 714 SUPERFAMILY SH2 domain 613 707 IPR036860 -
Vvi19g0011 714 FunFam SH2 domain protein B 602 714 - -
Vvi19g0011 714 MobiDBLite consensus disorder prediction 429 453 - -
Vvi19g0011 714 Gene3D SH2 domain 605 711 IPR036860 -
Vvi19g0011 714 Gene3D - 9 181 - -
Vvi19g0011 714 CDD SH2_SHA 605 714 - -
Vvi19g0011 714 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 24 705 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Vvi19g0011 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0011 - - vvi:100260583 1390.56