LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0010	ATGAAATGTCGGCGTTTCGGAGGGAAAGGAGAGGAAGACATGGGAGCTCTGAGCAAGCTAAGCCAATGGAGGACGCTAGCAAGAGAAGCAGCCGAACGAACAGCCATTCTCGCCAAGTTCCTCTGCATCCTCCACGTCACCAACACCTACATTTGTACCCCTACTCTCGTGTACGGTCCGAGCATGCTCCCGACGTTCAATCTGACGGGTGACGTGCTGTTGGTAGAGAACCTGACGGTGCGGATGGGGAAGGTGCGACCGGGAGACGTAGTTCTGGTTCGATCACCTGAAAACCCTAGAAAGACTGTGAGCAAGCGCATTTTGGGAATGGAAGGTGATAGGGTCACTTTCATGATCGATCCCAAGAACAGTAACAGATGTCAATCCGTCGTGATTCCAAAGGGGCATGTCTGGATTCAGGGGGATAATATTTATGCTTCTCATGATTCACGGAATTTTGGGCCTGTTCCCTACGGCCTTATTCAAGGCAAAGTTTTCTTCAGGGTATGGCCACTTAACGGCTTTGGATCATTGAGGCAATGA	543	0.5064	MKCRRFGGKGEEDMGALSKLSQWRTLAREAAERTAILAKFLCILHVTNTYICTPTLVYGPSMLPTFNLTGDVLLVENLTVRMGKVRPGDVVLVRSPENPRKTVSKRILGMEGDRVTFMIDPKNSNRCQSVVIPKGHVWIQGDNIYASHDSRNFGPVPYGLIQGKVFFRVWPLNGFGSLRQ*	181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0010	180	FunFam	Inner membrane protease subunit 1	48	177	-	-
	Vvi19g0010	180	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	21	179	-	-
	Vvi19g0010	180	SUPERFAMILY	LexA/Signal peptidase	49	178	IPR036286	-
	Vvi19g0010	180	Gene3D	Umud Fragment, subunit A	47	177	-	-
	Vvi19g0010	180	Pfam	Signal peptidase, peptidase S26	126	170	IPR019533	GO:0004252\|GO:0006465
	Vvi19g0010	180	Pfam	Signal peptidase, peptidase S26	36	117	IPR019533	GO:0004252\|GO:0006465
	Vvi19g0010	180	CDD	S26_SPase_I	54	165	IPR019533	GO:0004252\|GO:0006465
	Vvi19g0010	180	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	132	151	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vvi19g0010	180	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	103	115	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vvi19g0010	180	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0010	Vvi-Chr19	101199	109904	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0010	62	178	MADS-box Gene Family	AT1G29960	54.701	3.21e-44	141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0010	K09647		-	vvi:100255515	359.377