Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0009 ATGGGAAATGCTCGGATCATAGTGCTTTATATCACAGTATGTTGTATTGCTTTTGTTACATCAAAGGTCATCATCTCAGTCCTCCTGTATAAGAGATGGAAAAGAAAGCACTCGATTTACAAAGATAGCTTCTCAGGTGGGAAGATGGTGATGTTTACGTCTCCAATGATGCAATCTCTCAATTCCGATGCGTTGTTGAAGAAGGCAACAAGGTTGAGCAACAAAGATGTCATTGGGTCTGGAGGCCATGGTACTGTCTATAGACTGACAGTAGATGGCTCCGTAGCCTTTGCTGTAAAAAGACTAAACAGGGGAAGTGCAGATCAGGATCGAGGCTTTGAGCGAGAGTTGGAGGCCATGGGAGACATAAAGCACCGAAATATTGTAACCCTTCATGGATATTACACTGCCCCTCATTATAATCTTCTCATATATGAGCTAATGCCTAATGGGAGTTTGGATGCCTACCTCCATGGAAGACTGAAAGAAAAGAAGCTCCTGGATTGGCCTTCAAGATACAAAATAGCAGTAGGTGCTGCAAGAGGAATTGCATACCTTCATCATGATTGCATCCCACACATAATCCACAGAGATATCAAGTCTAGTAACATATTACTGGATCAGAACATGGAGGCTAGAGTCTCAGACTTTGGACTAGCAACGTTAATGGAACCAGATAAGACTCACGTTTCAACATTTGTAGCCGGGACTTTTGGATACTTGGCTCCAGAGTATTTTGACACAGGAAGAGCAACTGCAAAAGGGGATGTTTACAGCTTTGGTGTTGTTTTACTTGAGCTTTTAACAGGAAAAAGACCATCAGATGAAGCATTTATAGAGGAGGGAACCAGGCTTGTGACATGGGTGAAAGCCGTTGTTCTAGAGAAGAAGGAAGAGCATGTACTTGACAGCAGTTTAGAATGTTGTTCTCTTGATGAGGTTAACAATGTCTTCAGTATTGCTACAATGTGCCTTGAGTCAGAGCCCTCAAAGAGGCCTACCATGGCTGAGGTTCTCAAGATGCTTGAGCAAATAAAATCAGACAAACTTGTAAAAGAATCCTAA 1065 0.4225 MGNARIIVLYITVCCIAFVTSKVIISVLLYKRWKRKHSIYKDSFSGGKMVMFTSPMMQSLNSDALLKKATRLSNKDVIGSGGHGTVYRLTVDGSVAFAVKRLNRGSADQDRGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDAYLHGRLKEKKLLDWPSRYKIAVGAARGIAYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPDKTHVSTFVAGTFGYLAPEYFDTGRATAKGDVYSFGVVLLELLTGKRPSDEAFIEEGTRLVTWVKAVVLEKKEEHVLDSSLECCSLDEVNNVFSIATMCLESEPSKRPTMAEVLKMLEQIKSDKLVKES* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0009 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 354 - -
Vvi19g0009 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Vvi19g0009 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi19g0009 354 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0009 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 347 - -
Vvi19g0009 354 Gene3D Phosphorylase Kinase; domain 1 54 147 - -
Vvi19g0009 354 ProSiteProfiles Protein kinase domain profile. 72 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0009 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0009 354 SUPERFAMILY Protein kinase-like (PK-like) 50 344 IPR011009 -
Vvi19g0009 354 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Vvi19g0009 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0009 Vvi-Chr19 85815 87831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0009 12 344 Receptor kinase-like Gene Family AT2G35620 48.358 2.37e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vvi19g0009 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0009 - - vvi:100257246 707.212