Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2113 ATGGAAGTTCTTCTCCAGAAGCCCGATGCAGCCAAAGCTTTTGGTTCATTCCTTGATGAAGATCAGATTGCTGCTAATCTTGTGAAAAATGGTCAAATGGTAGTGGGTATCAATACAGTGCTCATGCAGACACATAATGGGGAAGTGTCACGCCCATACATATGCTCTGAGAAGATGGCTAATGGGAGCTTGAAGGACCGGCTTTTCAGGCGAGGAGATTCTCCACCTCTGTCTTGGCAGCTGAGGTTCCGAATTGTAGCTGAAATTCGCACTGGACTATTGTTCCCCCACCAGACTAAACCAGAGCCACTAGTGCACCATGACCTAAAACTGGCGAACATACTGCTGGACCCCAACTACGTGGGCAAGATTAGTGACGTTGGGTTGGTCAGGCTGGTTCCCCCATCTGTAGCTGACAATGTGACCCAGTATCGGATGACCTCAACAGATGGGACTTTCTGCTATATAGATCCAGAGTATCAGCAAGCAGGCATGCTGGGCATAAAATCTGATGTCTACTCTCTTGGCATCATGCTTCTGCAGATAATAACAGCCAAGCCGCCAATGGGGTTGATCCACCTTGTTGAAAGCGCTATTGGAAAAGATACATTCAAATAG 618 0.4741 MEVLLQKPDAAKAFGSFLDEDQIAANLVKNGQMVVGINTVLMQTHNGEVSRPYICSEKMANGSLKDRLFRRGDSPPLSWQLRFRIVAEIRTGLLFPHQTKPEPLVHHDLKLANILLDPNYVGKISDVGLVRLVPPSVADNVTQYRMTSTDGTFCYIDPEYQQAGMLGIKSDVYSLGIMLLQIITAKPPMGLIHLVESAIGKDTFK* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2113 205 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Vvi18g2113 205 ProSiteProfiles Protein kinase domain profile. 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2113 205 SUPERFAMILY Protein kinase-like (PK-like) 17 194 IPR011009 -
Vvi18g2113 205 PANTHER OS02G0152300 PROTEIN 56 205 - -
Vvi18g2113 205 SMART serkin_6 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2113 205 Pfam Protein kinase domain 18 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2113 205 Gene3D Transferase(Phosphotransferase) domain 1 5 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2113 Vvi-Chr18 29290057 29290738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2113 7 204 Receptor kinase-like Gene Family AT5G35380 62.500 1.12e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi18g2113 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2113 - - vvi:100250706 265.003