Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g2109 | ATGGGGAGGAGGAGACCAGAAGAATATGAGCTGAATGAGGTGGAAGATACCATCACAGGCTCTGTTGGGAGCAGAATGCGTCTGGTTTCCAGCGAGCTTGGACTCAGGAAGACTGCTTCCACCCTCTGCGCTCGTGGAGGCTTTGTCATCGATCCTAGATCAAGATTCTGCAACTGTTGGCAGCAGATCATTTTCTTATGGTCCATATTCTCATCCTTCTTCACACCCTTGGAGTTTTGCTTCTTCAGAGGCCTGCCAGACCATCTAGTCAGTCTTGAAAGCGCACAGATCATCTTCCTAGTTGATGTGGTCCTCCAGTTCTTCGTCGCCTACAAAGACCTTCATTCCTACAACATGGTGTATAACAGAAAAAGCATTGCCATACGCTATGCAAAGGGCAGTTTCTTGGTGGATTTTCTGGGGTGTGTGCCATGGGATGCCATCTACAAGGCCTCAGGGAGAAGGGAAGTGATGAGATATATGATTTGGATCAGACTGTATCGAGCAAGAAAGGTGGCACAGTTCTTCAAGAGAATGGAGAAGGATGTGAGGATCAATTACCTGTTCACTAGGATAGTGAAGCTGATAACAGTGGAGCTGTACTGCACACACACGGCTGCCTGCATCTTCTACTACTTGGCCACCACATTGCCACCTGCAGAAGAGGGGTATACATGGATTGGAAGCTTAACTATGGGAGATTACAAGTATATCAATTTCAGAGAGATTGATTTTTGGACCAGATATATCACTTCACTCTACTTTGCAATTGTCACCATGGCCACAGTTGGTTATGGGGATATTCATGCAGTTAACTTGAGGGAAATGATATTTATTATGATTTTTGTCTCTTTTGACATGATTCTTGGGGCATATTTGATTGGTAATATGACAGCTCTGACTGTCAAAGGCTCCAAGACAGAGAGATTTCGGGATAAAATGACTGATCTTATAAAATATATGAATCAGAACAAGCTCAATAAAGATATTAGGTCACAGATAAAAGATCATCTGAGTCTACAGTATGAGAATACCTATACTAAAGCTAGTGTTCTTGATGATATTCCCATAGCTCTCCGATCAAAGATTTCTGAGAATTTATATATCGAGATGGTCCAGAAAGTTCCGCTTTTCAAAGGATGTTGTGATGAGTTCTTAAAGCAGATAGTTATGAAGCTGAATGAAGAATTTTTTCTTCCTGGTGAAGTGATCCTTGAACAAAGCAGTGCTGTGGATCAAGTTTATATTGTATCTCATGGACGTCTGGAAGAGGTTGCTATTGGAGAAAATGGATCAGAAGAATTGATTGCAAATCTTGAACCCTGCAGTATATTTGGTGAAGTTGCAGTCTTATGCAATATTCCTCAGCCATATACAGTTCGTGTATGTGAATTATGCAGACTTCTAAGAATTGAAAAACAATCTTTGAATGGTATCTTGCAACTTTACTTCACAGACAGCCGCCAGATTCTGAATAATCTCCTAAAGGGTAAGGATACAGATTTGAGAATTAAACAGCTGGAATCCGATATTGCATATCTTATTACAAAGCAGTACTCTGAGCTAGCATTACGAGTAAATAGTGCAGCTTATCATGGAGACTTGTATCATTTGAAGGACTTGATCAAATCCGGAGCAGATCCTTGCAAAACTGATTATGATGGACGATGTGCACTTCACTTGGCTGCAGCAAAAGGTTATGAAGAAATTGTGAGGTTTCTCATTCAACATGGAGCCAACACTAACTGCATAGATAATTTTGGAAATTCACCTCTTTTTGAGGCTGTCAAGGCTGGGCATGATAGGACTGCTTTGCTTCTCATCGAGGATGGTGCAACCTTGAATTTGGAAGATGCTGGATGGTACCTTTGTAAGGCTGTAATGGGTAGCAACATTGATTTATTAAAGCGTTTGTTGGAGAATGGAGTTGACCCAAACTCCAGGAACTATGACCTACGAACACCACTACATTTTGCAGCAGCAGAAGGTTTGCACCTTGTGGCAAATATCTTGATCAAATTTGGAGCAGATGTTCTATCCAAAGACAGATACAGAAGAACTCCTCTTGATGAAGGCCGAGCATGTGGGAGCAAGCCTTTAATCAAAATTTTGGAGCAGGCTAAAGAGGCTTGCTTGGCAAGACACATGGTTGTTGAAAGGGCATGA | 2166 | 0.4164 | MGRRRPEEYELNEVEDTITGSVGSRMRLVSSELGLRKTASTLCARGGFVIDPRSRFCNCWQQIIFLWSIFSSFFTPLEFCFFRGLPDHLVSLESAQIIFLVDVVLQFFVAYKDLHSYNMVYNRKSIAIRYAKGSFLVDFLGCVPWDAIYKASGRREVMRYMIWIRLYRARKVAQFFKRMEKDVRINYLFTRIVKLITVELYCTHTAACIFYYLATTLPPAEEGYTWIGSLTMGDYKYINFREIDFWTRYITSLYFAIVTMATVGYGDIHAVNLREMIFIMIFVSFDMILGAYLIGNMTALTVKGSKTERFRDKMTDLIKYMNQNKLNKDIRSQIKDHLSLQYENTYTKASVLDDIPIALRSKISENLYIEMVQKVPLFKGCCDEFLKQIVMKLNEEFFLPGEVILEQSSAVDQVYIVSHGRLEEVAIGENGSEELIANLEPCSIFGEVAVLCNIPQPYTVRVCELCRLLRIEKQSLNGILQLYFTDSRQILNNLLKGKDTDLRIKQLESDIAYLITKQYSELALRVNSAAYHGDLYHLKDLIKSGADPCKTDYDGRCALHLAAAKGYEEIVRFLIQHGANTNCIDNFGNSPLFEAVKAGHDRTALLLIEDGATLNLEDAGWYLCKAVMGSNIDLLKRLLENGVDPNSRNYDLRTPLHFAAAEGLHLVANILIKFGADVLSKDRYRRTPLDEGRACGSKPLIKILEQAKEACLARHMVVERA* | 722 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat profile. | 651 | 683 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat profile. | 587 | 619 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat region circular profile. | 587 | 618 | - | - | |
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat region circular profile. | 554 | 586 | - | - | |
Vvi18g2109 | 721 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 377 | 497 | IPR000595 | - | |
Vvi18g2109 | 721 | SMART | ANK_2a | 521 | 550 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SMART | ANK_2a | 618 | 647 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SMART | ANK_2a | 651 | 680 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SMART | ANK_2a | 554 | 583 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SMART | ANK_2a | 587 | 616 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SUPERFAMILY | Voltage-gated potassium channels | 51 | 301 | - | - | |
Vvi18g2109 | 721 | Gene3D | Jelly Rolls | 361 | 499 | IPR014710 | - | |
Vvi18g2109 | 721 | Gene3D | - | 521 | 618 | IPR036770 | - | |
Vvi18g2109 | 721 | Gene3D | Helix hairpin bin | 304 | 360 | - | - | |
Vvi18g2109 | 721 | Pfam | Cyclic nucleotide-binding domain | 397 | 481 | IPR000595 | - | |
Vvi18g2109 | 721 | CDD | CAP_ED | 377 | 491 | IPR000595 | - | |
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat region circular profile. | 651 | 683 | - | - | |
Vvi18g2109 | 721 | Pfam | Ankyrin repeats (3 copies) | 529 | 618 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | Gene3D | - | 619 | 718 | IPR036770 | - | |
Vvi18g2109 | 721 | SMART | cnmp_10 | 377 | 495 | IPR000595 | - | |
Vvi18g2109 | 721 | SUPERFAMILY | Ankyrin repeat | 525 | 706 | IPR036770 | - | |
Vvi18g2109 | 721 | FunFam | Potassium channel KAT3 | 59 | 303 | - | - | |
Vvi18g2109 | 721 | Pfam | Ankyrin repeats (many copies) | 623 | 663 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | Gene3D | - | 60 | 302 | - | - | |
Vvi18g2109 | 721 | Pfam | Ion transport protein | 59 | 298 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Vvi18g2109 | 721 | PANTHER | POTASSIUM CHANNEL AKT1 | 34 | 709 | IPR045319 | GO:0005249|GO:0006813 | |
Vvi18g2109 | 721 | PRINTS | EAG/ELK/ERG potassium channel family signature | 293 | 302 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi18g2109 | 721 | PRINTS | EAG/ELK/ERG potassium channel family signature | 201 | 211 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi18g2109 | 721 | PRINTS | EAG/ELK/ERG potassium channel family signature | 249 | 266 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi18g2109 | 721 | FunFam | Potassium channel KAT2 | 365 | 501 | - | - | |
Vvi18g2109 | 721 | ProSiteProfiles | Ankyrin repeat profile. | 554 | 586 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | PRINTS | Ankyrin repeat signature | 555 | 570 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | PRINTS | Ankyrin repeat signature | 634 | 648 | IPR002110 | GO:0005515 | |
Vvi18g2109 | 721 | SUPERFAMILY | cAMP-binding domain-like | 305 | 495 | IPR018490 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi18g2109 | Vvi-Chr18 | 29203050 | 29240498 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi18g2109 | 635 | 704 | Ion Channels | AT5G37500 | 32.609 | 4.36e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g2109 | K21867 | - | vvi:100256909 | 1438.32 |