Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2109 ATGGGGAGGAGGAGACCAGAAGAATATGAGCTGAATGAGGTGGAAGATACCATCACAGGCTCTGTTGGGAGCAGAATGCGTCTGGTTTCCAGCGAGCTTGGACTCAGGAAGACTGCTTCCACCCTCTGCGCTCGTGGAGGCTTTGTCATCGATCCTAGATCAAGATTCTGCAACTGTTGGCAGCAGATCATTTTCTTATGGTCCATATTCTCATCCTTCTTCACACCCTTGGAGTTTTGCTTCTTCAGAGGCCTGCCAGACCATCTAGTCAGTCTTGAAAGCGCACAGATCATCTTCCTAGTTGATGTGGTCCTCCAGTTCTTCGTCGCCTACAAAGACCTTCATTCCTACAACATGGTGTATAACAGAAAAAGCATTGCCATACGCTATGCAAAGGGCAGTTTCTTGGTGGATTTTCTGGGGTGTGTGCCATGGGATGCCATCTACAAGGCCTCAGGGAGAAGGGAAGTGATGAGATATATGATTTGGATCAGACTGTATCGAGCAAGAAAGGTGGCACAGTTCTTCAAGAGAATGGAGAAGGATGTGAGGATCAATTACCTGTTCACTAGGATAGTGAAGCTGATAACAGTGGAGCTGTACTGCACACACACGGCTGCCTGCATCTTCTACTACTTGGCCACCACATTGCCACCTGCAGAAGAGGGGTATACATGGATTGGAAGCTTAACTATGGGAGATTACAAGTATATCAATTTCAGAGAGATTGATTTTTGGACCAGATATATCACTTCACTCTACTTTGCAATTGTCACCATGGCCACAGTTGGTTATGGGGATATTCATGCAGTTAACTTGAGGGAAATGATATTTATTATGATTTTTGTCTCTTTTGACATGATTCTTGGGGCATATTTGATTGGTAATATGACAGCTCTGACTGTCAAAGGCTCCAAGACAGAGAGATTTCGGGATAAAATGACTGATCTTATAAAATATATGAATCAGAACAAGCTCAATAAAGATATTAGGTCACAGATAAAAGATCATCTGAGTCTACAGTATGAGAATACCTATACTAAAGCTAGTGTTCTTGATGATATTCCCATAGCTCTCCGATCAAAGATTTCTGAGAATTTATATATCGAGATGGTCCAGAAAGTTCCGCTTTTCAAAGGATGTTGTGATGAGTTCTTAAAGCAGATAGTTATGAAGCTGAATGAAGAATTTTTTCTTCCTGGTGAAGTGATCCTTGAACAAAGCAGTGCTGTGGATCAAGTTTATATTGTATCTCATGGACGTCTGGAAGAGGTTGCTATTGGAGAAAATGGATCAGAAGAATTGATTGCAAATCTTGAACCCTGCAGTATATTTGGTGAAGTTGCAGTCTTATGCAATATTCCTCAGCCATATACAGTTCGTGTATGTGAATTATGCAGACTTCTAAGAATTGAAAAACAATCTTTGAATGGTATCTTGCAACTTTACTTCACAGACAGCCGCCAGATTCTGAATAATCTCCTAAAGGGTAAGGATACAGATTTGAGAATTAAACAGCTGGAATCCGATATTGCATATCTTATTACAAAGCAGTACTCTGAGCTAGCATTACGAGTAAATAGTGCAGCTTATCATGGAGACTTGTATCATTTGAAGGACTTGATCAAATCCGGAGCAGATCCTTGCAAAACTGATTATGATGGACGATGTGCACTTCACTTGGCTGCAGCAAAAGGTTATGAAGAAATTGTGAGGTTTCTCATTCAACATGGAGCCAACACTAACTGCATAGATAATTTTGGAAATTCACCTCTTTTTGAGGCTGTCAAGGCTGGGCATGATAGGACTGCTTTGCTTCTCATCGAGGATGGTGCAACCTTGAATTTGGAAGATGCTGGATGGTACCTTTGTAAGGCTGTAATGGGTAGCAACATTGATTTATTAAAGCGTTTGTTGGAGAATGGAGTTGACCCAAACTCCAGGAACTATGACCTACGAACACCACTACATTTTGCAGCAGCAGAAGGTTTGCACCTTGTGGCAAATATCTTGATCAAATTTGGAGCAGATGTTCTATCCAAAGACAGATACAGAAGAACTCCTCTTGATGAAGGCCGAGCATGTGGGAGCAAGCCTTTAATCAAAATTTTGGAGCAGGCTAAAGAGGCTTGCTTGGCAAGACACATGGTTGTTGAAAGGGCATGA 2166 0.4164 MGRRRPEEYELNEVEDTITGSVGSRMRLVSSELGLRKTASTLCARGGFVIDPRSRFCNCWQQIIFLWSIFSSFFTPLEFCFFRGLPDHLVSLESAQIIFLVDVVLQFFVAYKDLHSYNMVYNRKSIAIRYAKGSFLVDFLGCVPWDAIYKASGRREVMRYMIWIRLYRARKVAQFFKRMEKDVRINYLFTRIVKLITVELYCTHTAACIFYYLATTLPPAEEGYTWIGSLTMGDYKYINFREIDFWTRYITSLYFAIVTMATVGYGDIHAVNLREMIFIMIFVSFDMILGAYLIGNMTALTVKGSKTERFRDKMTDLIKYMNQNKLNKDIRSQIKDHLSLQYENTYTKASVLDDIPIALRSKISENLYIEMVQKVPLFKGCCDEFLKQIVMKLNEEFFLPGEVILEQSSAVDQVYIVSHGRLEEVAIGENGSEELIANLEPCSIFGEVAVLCNIPQPYTVRVCELCRLLRIEKQSLNGILQLYFTDSRQILNNLLKGKDTDLRIKQLESDIAYLITKQYSELALRVNSAAYHGDLYHLKDLIKSGADPCKTDYDGRCALHLAAAKGYEEIVRFLIQHGANTNCIDNFGNSPLFEAVKAGHDRTALLLIEDGATLNLEDAGWYLCKAVMGSNIDLLKRLLENGVDPNSRNYDLRTPLHFAAAEGLHLVANILIKFGADVLSKDRYRRTPLDEGRACGSKPLIKILEQAKEACLARHMVVERA* 722
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat profile. 587 619 IPR002110 GO:0005515
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat region circular profile. 587 618 - -
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat region circular profile. 554 586 - -
Vvi18g2109 721 ProSiteProfiles cAMP/cGMP binding motif profile. 377 497 IPR000595 -
Vvi18g2109 721 SMART ANK_2a 521 550 IPR002110 GO:0005515
Vvi18g2109 721 SMART ANK_2a 618 647 IPR002110 GO:0005515
Vvi18g2109 721 SMART ANK_2a 651 680 IPR002110 GO:0005515
Vvi18g2109 721 SMART ANK_2a 554 583 IPR002110 GO:0005515
Vvi18g2109 721 SMART ANK_2a 587 616 IPR002110 GO:0005515
Vvi18g2109 721 SUPERFAMILY Voltage-gated potassium channels 51 301 - -
Vvi18g2109 721 Gene3D Jelly Rolls 361 499 IPR014710 -
Vvi18g2109 721 Gene3D - 521 618 IPR036770 -
Vvi18g2109 721 Gene3D Helix hairpin bin 304 360 - -
Vvi18g2109 721 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Vvi18g2109 721 CDD CAP_ED 377 491 IPR000595 -
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat region circular profile. 651 683 - -
Vvi18g2109 721 Pfam Ankyrin repeats (3 copies) 529 618 IPR002110 GO:0005515
Vvi18g2109 721 Gene3D - 619 718 IPR036770 -
Vvi18g2109 721 SMART cnmp_10 377 495 IPR000595 -
Vvi18g2109 721 SUPERFAMILY Ankyrin repeat 525 706 IPR036770 -
Vvi18g2109 721 FunFam Potassium channel KAT3 59 303 - -
Vvi18g2109 721 Pfam Ankyrin repeats (many copies) 623 663 IPR002110 GO:0005515
Vvi18g2109 721 Gene3D - 60 302 - -
Vvi18g2109 721 Pfam Ion transport protein 59 298 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi18g2109 721 PANTHER POTASSIUM CHANNEL AKT1 34 709 IPR045319 GO:0005249|GO:0006813
Vvi18g2109 721 PRINTS EAG/ELK/ERG potassium channel family signature 293 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g2109 721 PRINTS EAG/ELK/ERG potassium channel family signature 201 211 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g2109 721 PRINTS EAG/ELK/ERG potassium channel family signature 249 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g2109 721 FunFam Potassium channel KAT2 365 501 - -
Vvi18g2109 721 ProSiteProfiles Ankyrin repeat profile. 554 586 IPR002110 GO:0005515
Vvi18g2109 721 PRINTS Ankyrin repeat signature 555 570 IPR002110 GO:0005515
Vvi18g2109 721 PRINTS Ankyrin repeat signature 634 648 IPR002110 GO:0005515
Vvi18g2109 721 SUPERFAMILY cAMP-binding domain-like 305 495 IPR018490 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi18g2109 Vvi-Chr18 29203050 29240498 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2109 635 704 Ion Channels AT5G37500 32.609 4.36e-06 48.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2109 K21867 - vvi:100256909 1438.32