Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2107 ATGAAGATACCGTGTGATATATGTGGGAATGTGGAGGCTGAGGTTCTATGTAGTGCTGATGAGGCAGTACTCTGTTGGGGATGCGATGAAAGGGTGCACACAGCTAACAAGCTGTCCCAGAAGCATCAACGTGTCCCTCTTCTCAAACACCCACCCTCCACTTCATCTTCTCAGCTGCCTCCTTGTGATATCTGCCAGGAGAAAAGCGGGTATTTTTTCTGCCTGGAGGACAGGGCATTACTCTGCAAGAACTGTGATGTTTCAACTCATTCAACAAACTCTTACGTGTCGTCACACCGACGTTTTGTCATATCAGGAATCAAAGTTGCTCTTCAATCCGTAACTAACAACTACAGAACTGGCTGCAACAGCAGAACCTACCCTCTCGATATGCCAAACTCAAATAGTTCTTCAGTCAACTTCCCAATGGATAGGGAGAAGAAGCCAGAAATGACCACAGAAGTTGCATCCACATCCTCAGACATGGTAGCCATGTTCTCAGGTGAAATCCATTTGGCAACTGGACCTGAATGGACATTAGATGAAATCCTTGGGAGCAATGATTTTGACTATTATGAGTTTTCGGACATGGGGCAATCCAGGATTAGCAGCCAATGA 618 0.4579 MKIPCDICGNVEAEVLCSADEAVLCWGCDERVHTANKLSQKHQRVPLLKHPPSTSSSQLPPCDICQEKSGYFFCLEDRALLCKNCDVSTHSTNSYVSSHRRFVISGIKVALQSVTNNYRTGCNSRTYPLDMPNSNSSSVNFPMDREKKPEMTTEVASTSSDMVAMFSGEIHLATGPEWTLDEILGSNDFDYYEFSDMGQSRISSQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2107 205 FunFam B-box zinc finger protein 22 1 98 - -
Vvi18g2107 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi18g2107 205 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Vvi18g2107 205 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270
Vvi18g2107 205 CDD Bbox1_BBX-like 61 104 - -
Vvi18g2107 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi18g2107 205 SMART bboxneu5 57 104 IPR000315 GO:0008270
Vvi18g2107 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Vvi18g2107 205 Gene3D Classic Zinc Finger 1 98 - -
Vvi18g2107 205 SUPERFAMILY B-box zinc-binding domain 51 97 - -
Vvi18g2107 205 CDD Bbox1_BBX-like 4 47 - -
Vvi18g2107 205 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2107 Vvi-Chr18 29194471 29196480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2107 1 194 C2C2-CO-like Transcription Factor Family AT1G78600 41.905 8.31e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vvi18g2107 zf-B_box 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2107 - - vvi:109121578 428.713