Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g2095 | ATGAGGATGAAGCCGTGGTTGTTGCTGATGCTGCTCATATGGCCATGGATCGAAGAAGGAATTAGTAAAACACCAGCATTCTCGCTTGCAGAGTCGAACTGCAGTTACCAATGTGGGAAAGTAATGATTCCTTACCCATTTGGAATTGGAAATGCTGAATGTGCTAAGGACAAGAATTTCCTTCTCAAGTGCAACAATGGTCAGCCATTTTTGCTTCAAAACATTCCTGTTCTTGGTATATCACTGGCACAAGGCACAGTTACTGTTAGCCTTCAAAGTGCATCTGAACGCAATAAGAAGCATACTCTGACTGATAAAATATTCTATGGTGGATTCAACCTGGAAGGCAGCCCATTTATGTTGTCCAACTCAAACAAGTTCATAGTTCTCGGTTGCAATGTAACGGCTTTTATCACTGAAGGCAAGGAGTTGCGTAGCGGGTGTATCACTTTCTGCAATGAAGATGGGAATCCAGATGAACTTGGCTCCTGCTCTGGCATTGGATGCTGCAAGACCTCAATTCCAAATCATCTCAAGAGCTTGAACGTCTCACTCTTTAACCTAACTTTTTCGGATACCAGTAGCTTTGGCCTGCACATGTTCTTGGCTGCAAGAGGGACATTCAATTTTTCAGAAACAAATCTGTCTGAGCACCTCAACCGGACTATAAATTCGCAGGTAGACCTTGATTGGGTGGTGGGAGAAAAGACTTGCAAGGAAGCTCAAGCCAACTGCGGCAAGAACACTGTTTGCTCAGACTCTACCAATGGCCCTGGATATCGCTGCTTCTGCAAACCGGGATTCTCGGGAAATCCCTATCGTCCTAATGGTTGCGAAGACATTGATGAGTGCAGCGAACCAAATATATACCAGTGTGAAGGTATTTGCCGGAATACAGTTGGGAACTACAGTTGCCGCTGCCCATTTGGAATGCATGGTGAAGGGAAAGTGGCTTGCAGAGGACACCATACTGCTACTGTATTCTTAGGCATAGGCTTAAGCCTTGGATTCTTATTGGCACTTTCCGGGCTTTTTCGATTGTATTTACTGGTTCATGAACAGAACAGCATCAAACTGAAAAGGAAATTTTTCAAGAGAAATGGTGGCTTATTGCTGGAGCAACAGATCTCTTCAGACAAAGGGAAACTCGAAAAAATAAAAAATTTCACTTCGGAGGAGTTGGAGAAGGCCACAGATCACTACAATGACAACCGAATCCTTGGGCAAGGAGGCCAAGGTATTGTTTACAAAGCAATGTTACCGGATGGAAACCTTGTAGCTGTGAAGAAGTCCGAAATGATGGATGAAGGTCAAATTGAACACTTCGTCAACGAGGTCGTAATACTTTCGCAGATCAACCACAGACATGTTGTGAAACTGTTAGGTTGCTGTTTAGAAACTGAGGTTCCTCTACTAGTATATGAGTATGTCTCCAATGGAACCCTTTCCGACCACATCCATGCTCAGCTGGAGGAGGCTCCAATGAAATGGGCAGATCGGTTCAGAATTGCTAAGGAAGTTGCAGGAGCAATAGCCTATATGCATTCAGCAGCTGCTGTACCAATCTATCATAGAGACGTCAAGTCCAGTAATATACTCTTAGACGAGAAATATAGGGCAAAATTGTCTGATTTTGGGATTTCAAGGTCTGTCCCAACCGGAAAAACTCACTTGACCACATCGGTACAAGGCACGTTTGGGTACTTGGATCCTGAGTACTTCCAGTCATACCAGTGTACAGCAAAGAGCGATGTTTACAGCTTTGGAGTAGTTCTTGTTGAGCTCTTGACAGGACGAAGGCCAATATCCATGGTTAGATCAGAGGATGATATGGGCTTAGCTGCACACTTCATATCATCAGCAAAGGAGAATCATCTCTTGGATGTATTGGATCCACAAGTTGTGTTGGAGGGAGAAAAGGAGGAGCTATTAATTGTTTCTAACCTTGCACTGAGATGCTTGAAGTTGAATGGAAGGAAAAGGCCAACAATGAAAGAAGTTGCTTTGAAGCTTGAAAATCTGAAAAACCGACGAAAGCGCCTGCTTGCTGATCAACAAGAACATCAAGATGGAGATTACTCCATAATTGAACCATCAAGAAGGTTGGACGTTAGTGCAGTTCCAATGAAGGCTAGGAGGTTGGAGAGAAGTGATGAATTGGAGCTAGACATCCAGGAGCTAATGATTAAGTCAACATTTTTGACATGCTGA | 2211 | 0.4365 | MRMKPWLLLMLLIWPWIEEGISKTPAFSLAESNCSYQCGKVMIPYPFGIGNAECAKDKNFLLKCNNGQPFLLQNIPVLGISLAQGTVTVSLQSASERNKKHTLTDKIFYGGFNLEGSPFMLSNSNKFIVLGCNVTAFITEGKELRSGCITFCNEDGNPDELGSCSGIGCCKTSIPNHLKSLNVSLFNLTFSDTSSFGLHMFLAARGTFNFSETNLSEHLNRTINSQVDLDWVVGEKTCKEAQANCGKNTVCSDSTNGPGYRCFCKPGFSGNPYRPNGCEDIDECSEPNIYQCEGICRNTVGNYSCRCPFGMHGEGKVACRGHHTATVFLGIGLSLGFLLALSGLFRLYLLVHEQNSIKLKRKFFKRNGGLLLEQQISSDKGKLEKIKNFTSEELEKATDHYNDNRILGQGGQGIVYKAMLPDGNLVAVKKSEMMDEGQIEHFVNEVVILSQINHRHVVKLLGCCLETEVPLLVYEYVSNGTLSDHIHAQLEEAPMKWADRFRIAKEVAGAIAYMHSAAAVPIYHRDVKSSNILLDEKYRAKLSDFGISRSVPTGKTHLTTSVQGTFGYLDPEYFQSYQCTAKSDVYSFGVVLVELLTGRRPISMVRSEDDMGLAAHFISSAKENHLLDVLDPQVVLEGEKEELLIVSNLALRCLKLNGRKRPTMKEVALKLENLKNRRKRLLADQQEHQDGDYSIIEPSRRLDVSAVPMKARRLERSDELELDIQELMIKSTFLTC* | 737 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g2095 | 736 | ProSiteProfiles | Protein kinase domain profile. | 401 | 674 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g2095 | 736 | Coils | Coil | 664 | 691 | - | - | |
Vvi18g2095 | 736 | Gene3D | Transferase(Phosphotransferase) domain 1 | 477 | 698 | - | - | |
Vvi18g2095 | 736 | FunFam | Wall-associated receptor kinase 2 | 371 | 476 | - | - | |
Vvi18g2095 | 736 | CDD | STKc_IRAK | 407 | 674 | - | - | |
Vvi18g2095 | 736 | SMART | egf_5 | 283 | 320 | IPR000742 | - | |
Vvi18g2095 | 736 | SMART | egf_5 | 237 | 279 | IPR000742 | - | |
Vvi18g2095 | 736 | SUPERFAMILY | Protein kinase-like (PK-like) | 386 | 669 | IPR011009 | - | |
Vvi18g2095 | 736 | SMART | serkin_6 | 401 | 675 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g2095 | 736 | Pfam | Protein kinase domain | 401 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g2095 | 736 | SMART | egfca_6 | 280 | 320 | IPR001881 | GO:0005509 | |
Vvi18g2095 | 736 | SUPERFAMILY | Growth factor receptor domain | 236 | 316 | IPR009030 | - | |
Vvi18g2095 | 736 | FunFam | Wall-associated receptor kinase 2 | 477 | 693 | - | - | |
Vvi18g2095 | 736 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 30 | 678 | IPR045274 | GO:0007166 | |
Vvi18g2095 | 736 | ProSitePatterns | Calcium-binding EGF-like domain signature. | 280 | 305 | IPR018097 | GO:0005509 | |
Vvi18g2095 | 736 | Pfam | Calcium-binding EGF domain | 280 | 319 | IPR001881 | GO:0005509 | |
Vvi18g2095 | 736 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 522 | 534 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi18g2095 | 736 | CDD | EGF_CA | 280 | 313 | - | - | |
Vvi18g2095 | 736 | ProSitePatterns | Aspartic acid and asparagine hydroxylation site. | 296 | 307 | IPR000152 | - | |
Vvi18g2095 | 736 | Gene3D | Laminin | 235 | 282 | - | - | |
Vvi18g2095 | 736 | Gene3D | Laminin | 283 | 319 | - | - | |
Vvi18g2095 | 736 | ProSiteProfiles | EGF-like domain profile. | 280 | 314 | IPR000742 | - | |
Vvi18g2095 | 736 | Gene3D | Phosphorylase Kinase; domain 1 | 372 | 476 | - | - | |
Vvi18g2095 | 736 | Pfam | Wall-associated receptor kinase galacturonan-binding | 34 | 89 | IPR025287 | GO:0030247 | |
Vvi18g2095 | 736 | ProSiteProfiles | EGF-like domain profile. | 234 | 279 | IPR000742 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi18g2095 | Vvi-Chr18 | 29055947 | 29058702 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi18g2095 | 3 | 692 | Receptor kinase-like Gene Family | AT1G16260 | 41.808 | 4.93e-171 | 506 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_WAK | Vvi18g2095 | Pkinase | 3.9e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g2095 | - | - | vvi:100246536 | 1461.05 |