Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2095 ATGAGGATGAAGCCGTGGTTGTTGCTGATGCTGCTCATATGGCCATGGATCGAAGAAGGAATTAGTAAAACACCAGCATTCTCGCTTGCAGAGTCGAACTGCAGTTACCAATGTGGGAAAGTAATGATTCCTTACCCATTTGGAATTGGAAATGCTGAATGTGCTAAGGACAAGAATTTCCTTCTCAAGTGCAACAATGGTCAGCCATTTTTGCTTCAAAACATTCCTGTTCTTGGTATATCACTGGCACAAGGCACAGTTACTGTTAGCCTTCAAAGTGCATCTGAACGCAATAAGAAGCATACTCTGACTGATAAAATATTCTATGGTGGATTCAACCTGGAAGGCAGCCCATTTATGTTGTCCAACTCAAACAAGTTCATAGTTCTCGGTTGCAATGTAACGGCTTTTATCACTGAAGGCAAGGAGTTGCGTAGCGGGTGTATCACTTTCTGCAATGAAGATGGGAATCCAGATGAACTTGGCTCCTGCTCTGGCATTGGATGCTGCAAGACCTCAATTCCAAATCATCTCAAGAGCTTGAACGTCTCACTCTTTAACCTAACTTTTTCGGATACCAGTAGCTTTGGCCTGCACATGTTCTTGGCTGCAAGAGGGACATTCAATTTTTCAGAAACAAATCTGTCTGAGCACCTCAACCGGACTATAAATTCGCAGGTAGACCTTGATTGGGTGGTGGGAGAAAAGACTTGCAAGGAAGCTCAAGCCAACTGCGGCAAGAACACTGTTTGCTCAGACTCTACCAATGGCCCTGGATATCGCTGCTTCTGCAAACCGGGATTCTCGGGAAATCCCTATCGTCCTAATGGTTGCGAAGACATTGATGAGTGCAGCGAACCAAATATATACCAGTGTGAAGGTATTTGCCGGAATACAGTTGGGAACTACAGTTGCCGCTGCCCATTTGGAATGCATGGTGAAGGGAAAGTGGCTTGCAGAGGACACCATACTGCTACTGTATTCTTAGGCATAGGCTTAAGCCTTGGATTCTTATTGGCACTTTCCGGGCTTTTTCGATTGTATTTACTGGTTCATGAACAGAACAGCATCAAACTGAAAAGGAAATTTTTCAAGAGAAATGGTGGCTTATTGCTGGAGCAACAGATCTCTTCAGACAAAGGGAAACTCGAAAAAATAAAAAATTTCACTTCGGAGGAGTTGGAGAAGGCCACAGATCACTACAATGACAACCGAATCCTTGGGCAAGGAGGCCAAGGTATTGTTTACAAAGCAATGTTACCGGATGGAAACCTTGTAGCTGTGAAGAAGTCCGAAATGATGGATGAAGGTCAAATTGAACACTTCGTCAACGAGGTCGTAATACTTTCGCAGATCAACCACAGACATGTTGTGAAACTGTTAGGTTGCTGTTTAGAAACTGAGGTTCCTCTACTAGTATATGAGTATGTCTCCAATGGAACCCTTTCCGACCACATCCATGCTCAGCTGGAGGAGGCTCCAATGAAATGGGCAGATCGGTTCAGAATTGCTAAGGAAGTTGCAGGAGCAATAGCCTATATGCATTCAGCAGCTGCTGTACCAATCTATCATAGAGACGTCAAGTCCAGTAATATACTCTTAGACGAGAAATATAGGGCAAAATTGTCTGATTTTGGGATTTCAAGGTCTGTCCCAACCGGAAAAACTCACTTGACCACATCGGTACAAGGCACGTTTGGGTACTTGGATCCTGAGTACTTCCAGTCATACCAGTGTACAGCAAAGAGCGATGTTTACAGCTTTGGAGTAGTTCTTGTTGAGCTCTTGACAGGACGAAGGCCAATATCCATGGTTAGATCAGAGGATGATATGGGCTTAGCTGCACACTTCATATCATCAGCAAAGGAGAATCATCTCTTGGATGTATTGGATCCACAAGTTGTGTTGGAGGGAGAAAAGGAGGAGCTATTAATTGTTTCTAACCTTGCACTGAGATGCTTGAAGTTGAATGGAAGGAAAAGGCCAACAATGAAAGAAGTTGCTTTGAAGCTTGAAAATCTGAAAAACCGACGAAAGCGCCTGCTTGCTGATCAACAAGAACATCAAGATGGAGATTACTCCATAATTGAACCATCAAGAAGGTTGGACGTTAGTGCAGTTCCAATGAAGGCTAGGAGGTTGGAGAGAAGTGATGAATTGGAGCTAGACATCCAGGAGCTAATGATTAAGTCAACATTTTTGACATGCTGA 2211 0.4365 MRMKPWLLLMLLIWPWIEEGISKTPAFSLAESNCSYQCGKVMIPYPFGIGNAECAKDKNFLLKCNNGQPFLLQNIPVLGISLAQGTVTVSLQSASERNKKHTLTDKIFYGGFNLEGSPFMLSNSNKFIVLGCNVTAFITEGKELRSGCITFCNEDGNPDELGSCSGIGCCKTSIPNHLKSLNVSLFNLTFSDTSSFGLHMFLAARGTFNFSETNLSEHLNRTINSQVDLDWVVGEKTCKEAQANCGKNTVCSDSTNGPGYRCFCKPGFSGNPYRPNGCEDIDECSEPNIYQCEGICRNTVGNYSCRCPFGMHGEGKVACRGHHTATVFLGIGLSLGFLLALSGLFRLYLLVHEQNSIKLKRKFFKRNGGLLLEQQISSDKGKLEKIKNFTSEELEKATDHYNDNRILGQGGQGIVYKAMLPDGNLVAVKKSEMMDEGQIEHFVNEVVILSQINHRHVVKLLGCCLETEVPLLVYEYVSNGTLSDHIHAQLEEAPMKWADRFRIAKEVAGAIAYMHSAAAVPIYHRDVKSSNILLDEKYRAKLSDFGISRSVPTGKTHLTTSVQGTFGYLDPEYFQSYQCTAKSDVYSFGVVLVELLTGRRPISMVRSEDDMGLAAHFISSAKENHLLDVLDPQVVLEGEKEELLIVSNLALRCLKLNGRKRPTMKEVALKLENLKNRRKRLLADQQEHQDGDYSIIEPSRRLDVSAVPMKARRLERSDELELDIQELMIKSTFLTC* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2095 736 ProSiteProfiles Protein kinase domain profile. 401 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2095 736 Coils Coil 664 691 - -
Vvi18g2095 736 Gene3D Transferase(Phosphotransferase) domain 1 477 698 - -
Vvi18g2095 736 FunFam Wall-associated receptor kinase 2 371 476 - -
Vvi18g2095 736 CDD STKc_IRAK 407 674 - -
Vvi18g2095 736 SMART egf_5 283 320 IPR000742 -
Vvi18g2095 736 SMART egf_5 237 279 IPR000742 -
Vvi18g2095 736 SUPERFAMILY Protein kinase-like (PK-like) 386 669 IPR011009 -
Vvi18g2095 736 SMART serkin_6 401 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2095 736 Pfam Protein kinase domain 401 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2095 736 SMART egfca_6 280 320 IPR001881 GO:0005509
Vvi18g2095 736 SUPERFAMILY Growth factor receptor domain 236 316 IPR009030 -
Vvi18g2095 736 FunFam Wall-associated receptor kinase 2 477 693 - -
Vvi18g2095 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 678 IPR045274 GO:0007166
Vvi18g2095 736 ProSitePatterns Calcium-binding EGF-like domain signature. 280 305 IPR018097 GO:0005509
Vvi18g2095 736 Pfam Calcium-binding EGF domain 280 319 IPR001881 GO:0005509
Vvi18g2095 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vvi18g2095 736 CDD EGF_CA 280 313 - -
Vvi18g2095 736 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 296 307 IPR000152 -
Vvi18g2095 736 Gene3D Laminin 235 282 - -
Vvi18g2095 736 Gene3D Laminin 283 319 - -
Vvi18g2095 736 ProSiteProfiles EGF-like domain profile. 280 314 IPR000742 -
Vvi18g2095 736 Gene3D Phosphorylase Kinase; domain 1 372 476 - -
Vvi18g2095 736 Pfam Wall-associated receptor kinase galacturonan-binding 34 89 IPR025287 GO:0030247
Vvi18g2095 736 ProSiteProfiles EGF-like domain profile. 234 279 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2095 Vvi-Chr18 29055947 29058702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2095 3 692 Receptor kinase-like Gene Family AT1G16260 41.808 4.93e-171 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g2095 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2095 - - vvi:100246536 1461.05