LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g2094	ATGCCTGGGCCAATTGCAAAGCCACACTGTCCAGATAAATGTGGGAACATATCAATTCCTTACCCATTTGGGATTGGAGATGTGAAATGCGCCAAGGATGACAAGTTCCTTCTGCAGTGCAACAATGGCCAGCCATTGTTACTTGGTTCCCTTCCTGTTCGCCATTTATCGATAAAGGGCACCGTGAATGTTACCATGAAGACCAAACGGCAATGCTTTTCTAATGGAGTATCCGAGGTAAACTTTTATGGTGGCATTAAGCTGGCAGGCAGCCCATTCACGTTCTTCCACAATCGTAACAAATTTGTAGTTCTTGGCTGCAATATAACTGCTTTGATTGATAACAACCGGGAGTATCGGAGGGCGTGTTTATCTTTCTGCCGGGGATACCCTCCCTCTGCCGCACCAGGGTTTTGCACCACCTCCCTCCCGAAGCAACTCAAGACTTTGAATATCACACTCTTCAGCATCGACCCCTCCTCGGATTCCAATCATAAATTTTGCCTACACGCTTTTGTGGCCGCCAAATCTACTTATAGTATTTCGGAAATAAATCTCTCCAAGCATCCTGTAACTACACAAGTGACACTTCAATGGGTTGTAGGAGAAGAAAAGTGCGAAGCCTCTGGAAACAGATCAGAAACATATGCATGTGGCAAAAACACTGAGTGTCAGAGCTCCACCAATGGCCCCGGATATCGATGCATATGCAAACAAGGCTTTCAGGGAAACCCCTATCTTCCCGGAGGTTGCCAAGATATTGACGAGTGTGACGATCCAAGTGGATATCCGTGTGACGGATTCTGCCAGAATACAGCTGGAGATTACACTTGTAGAAGGTCTGATGAAAGTGAAGTGAATAGCCGAAGACATGGCGTTGCCATTTTGGCATCAGCTATAATCTTAAGCATTGGATTCTTGTTGTTAATTGCTGGAATTTACTGGTTGAATGCGCTCGTGAAGAAAAGGAAGATCATTAAACTCAAGAAAAAGTTATTTAAGCGCAATGGAGGTTTGTTATTACAGCAACAAATCTCCTCAGACAAAGGCAAACTTGAGAAACTAAAAATTTTCTCCTCCGAGGAGTTAGAGAAGGCAACTGATTACTATAATGAGAACCGCATCCTTGGGAAAGGAGGCCAAGTTATAGTTTATAAAGGAATGTTACCCGATGGAAGCGTTGTAGCCGTTAAGAAGTCTAAAAAGATGGATAAAGCTCAAATTGAACGCTTCGCAAATGAGGTGGTCATACTTTCCCAGATCAATCACAGAAATGTGGTTAAACTGTTAGGTTGTTGTTTAGAAACTGAGGTTCCACTGCTGGTGTATGAGTTTGTCTCAAACGGAACCCTTTCTAACCATATCCATGATCAGATGGAGGAGTCTCCAATGAAATTGTCGGATCGGTTAAGAGTTGCTAAGGAAGTTGCAGGGGCACTGTCCTACATGCATTCAGCTGCTGATGTACCAATCTATCATAGAGACATCAAGTCGAGTAACATACTCTTGGATGGGAAATATAGAGCAAAGTTGTCCGATTTCGGGATTTCCAGGTCTGTTCCAACAGAAAAATCTCACTTAACCACAAGTGTGCGGGGGACGTTTGGGTATTTGGATCCAGAGTATTTTCAGTCAAGCCAATATACAGAAAAGAGTGATGTTTATAGCTTTGGAGTTGTTCTTGTTGAACTCTTGACAGGACAAAAGCCAATTTCTGGTCTTAGATCTGAAGATATGGGATTAGCTGCACATTTCATATGCTCAGCAAAGAAAAATCGTCTCTTCGATGTGTTGGATCCGCAAGTTGTGATGGAGGGAGAAAAAGAGGAGCTAGTAATCTTGGCCAACCTCGCAATGAGGTGCTTGAAGTTGAGTGGAAGTAAAAGGCCAACCATGAAAGAAGTTTCTTGGGAGCTGGAAAATCTGAAAAAGCTTCAAAAGCATTTGCCTGTTGAACTAGACCATCAAGAGGACGATTACTACTTTGCGGAATCGTCAAGAAGTTTGGAGCCCGGAGATGAATTGGAACTAGACATGCATCCAAGATCGACTGAATAG	2058	0.4329	MPGPIAKPHCPDKCGNISIPYPFGIGDVKCAKDDKFLLQCNNGQPLLLGSLPVRHLSIKGTVNVTMKTKRQCFSNGVSEVNFYGGIKLAGSPFTFFHNRNKFVVLGCNITALIDNNREYRRACLSFCRGYPPSAAPGFCTTSLPKQLKTLNITLFSIDPSSDSNHKFCLHAFVAAKSTYSISEINLSKHPVTTQVTLQWVVGEEKCEASGNRSETYACGKNTECQSSTNGPGYRCICKQGFQGNPYLPGGCQDIDECDDPSGYPCDGFCQNTAGDYTCRRSDESEVNSRRHGVAILASAIILSIGFLLLIAGIYWLNALVKKRKIIKLKKKLFKRNGGLLLQQQISSDKGKLEKLKIFSSEELEKATDYYNENRILGKGGQVIVYKGMLPDGSVVAVKKSKKMDKAQIERFANEVVILSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSNHIHDQMEESPMKLSDRLRVAKEVAGALSYMHSAADVPIYHRDIKSSNILLDGKYRAKLSDFGISRSVPTEKSHLTTSVRGTFGYLDPEYFQSSQYTEKSDVYSFGVVLVELLTGQKPISGLRSEDMGLAAHFICSAKKNRLFDVLDPQVVMEGEKEELVILANLAMRCLKLSGSKRPTMKEVSWELENLKKLQKHLPVELDHQEDDYYFAESSRSLEPGDELELDMHPRSTE*	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g2094	685	Gene3D	Transferase(Phosphotransferase) domain 1	446	665	-	-
	Vvi18g2094	685	ProSiteProfiles	Protein kinase domain profile.	370	651	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g2094	685	SUPERFAMILY	Protein kinase-like (PK-like)	355	653	IPR011009	-
	Vvi18g2094	685	ProSitePatterns	Calcium-binding EGF-like domain signature.	253	278	IPR018097	GO:0005509
	Vvi18g2094	685	FunFam	Wall-associated receptor kinase 2	446	661	-	-
	Vvi18g2094	685	FunFam	Wall-associated receptor kinase 2	340	445	-	-
	Vvi18g2094	685	SMART	serkin_6	370	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g2094	685	CDD	STKc_IRAK	376	642	-	-
	Vvi18g2094	685	Gene3D	Laminin	256	290	-	-
	Vvi18g2094	685	Gene3D	Phosphorylase Kinase; domain 1	344	445	-	-
	Vvi18g2094	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	491	503	IPR008271	GO:0004672\|GO:0006468
	Vvi18g2094	685	FunFam	Wall-associated receptor kinase 2	204	255	-	-
	Vvi18g2094	685	Pfam	Protein kinase domain	370	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g2094	685	MobiDBLite	consensus disorder prediction	664	685	-	-
	Vvi18g2094	685	CDD	EGF_CA	253	278	-	-
	Vvi18g2094	685	Gene3D	Laminin	204	255	-	-
	Vvi18g2094	685	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	6	645	IPR045274	GO:0007166
	Vvi18g2094	685	Pfam	Wall-associated receptor kinase galacturonan-binding	10	57	IPR025287	GO:0030247

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g2094	Vvi-Chr18	29047256	29049919	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g2094	9	643	Receptor kinase-like Gene Family	AT1G16130	43.459	3.25e-166	493

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vvi18g2094		Pkinase	7.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g2094	-		-	vvi:100241421	1353.96